Atomistry » Sodium » PDB 7pfi-7q77 » 7q0t
Atomistry »
  Sodium »
    PDB 7pfi-7q77 »
      7q0t »

Sodium in PDB 7q0t: Lysozyme Soaked with V(IV)OSO4

Enzymatic activity of Lysozyme Soaked with V(IV)OSO4

All present enzymatic activity of Lysozyme Soaked with V(IV)OSO4:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Soaked with V(IV)OSO4, PDB code: 7q0t was solved by M.F.A.Santos, A.C.P.Fernandes, I.Correia, G.Sciortino, E.Garribba, T.Santos-Silva, J.C.Pessoa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.05 / 1.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.102, 78.102, 36.577, 90, 90, 90
R / Rfree (%) 12.7 / 17.1

Other elements in 7q0t:

The structure of Lysozyme Soaked with V(IV)OSO4 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Vanadium (V) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Soaked with V(IV)OSO4 (pdb code 7q0t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Soaked with V(IV)OSO4, PDB code: 7q0t:

Sodium binding site 1 out of 1 in 7q0t

Go back to Sodium Binding Sites List in 7q0t
Sodium binding site 1 out of 1 in the Lysozyme Soaked with V(IV)OSO4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Soaked with V(IV)OSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:15.6
occ:1.00
O A:SER60 2.3 15.1 1.0
O A:ARG73 2.4 17.9 1.0
O A:HOH362 2.4 19.1 1.0
O A:CYS64 2.4 13.4 1.0
O A:HOH333 2.5 15.1 1.0
OG A:SER72 2.5 17.8 1.0
CB A:SER72 3.3 19.6 1.0
C A:SER60 3.4 13.4 1.0
C A:CYS64 3.4 12.6 1.0
C A:ARG73 3.5 17.0 1.0
CA A:ASN65 3.9 13.0 1.0
N A:ARG73 3.9 18.3 1.0
CA A:SER60 4.0 13.6 1.0
C A:SER72 4.1 18.0 1.0
N A:ASN65 4.1 12.9 1.0
CB A:SER60 4.2 12.7 1.0
CA A:ARG73 4.3 16.4 1.0
CA A:SER72 4.3 18.6 1.0
N A:ASN74 4.3 16.5 1.0
N A:CYS64 4.4 12.8 1.0
N A:ARG61 4.5 14.3 1.0
O A:HOH407 4.5 41.5 1.0
N A:ASP66 4.6 12.9 1.0
CA A:ASN74 4.6 15.6 1.0
C A:ARG61 4.6 15.2 1.0
CB A:THR69 4.6 14.1 1.0
O A:ARG61 4.6 18.4 1.0
CA A:CYS64 4.6 12.8 1.0
OD1 A:ASN65 4.6 18.0 1.0
CL A:CL204 4.6 18.3 1.0
O A:SER72 4.7 21.6 1.0
CB A:ASN74 4.8 16.3 1.0
C A:ASN65 4.8 12.6 1.0
CB A:ASN65 4.8 15.2 1.0
CA A:ARG61 4.8 15.1 1.0
N A:TRP62 4.8 14.3 1.0
O A:THR69 4.9 16.3 1.0
OG A:SER60 5.0 12.5 1.0

Reference:

M.F.A.Santos, G.Sciortino, I.Correia, A.C.P.Fernandes, T.Santos-Silva, F.Pisanu, E.Garribba, J.Costa Pessoa. Binding of V IV O 2+ , V IV Ol, V IV Ol 2 and V V O 2 L Moieties to Proteins: X-Ray/Theoretical Characterization and Biological Implications. Chemistry V. 28 00105 2022.
ISSN: ISSN 0947-6539
PubMed: 35486702
DOI: 10.1002/CHEM.202200105
Page generated: Tue Oct 8 18:33:57 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy