Atomistry » Sodium » PDB 7pfi-7q77 » 7pwn
Atomistry »
  Sodium »
    PDB 7pfi-7q77 »
      7pwn »

Sodium in PDB 7pwn: Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

Enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

All present enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn was solved by T.Prange, N.Colloc'h, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.63 / 1.64
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.429, 95.177, 104.398, 90, 90, 90
R / Rfree (%) 17.6 / 20.9

Other elements in 7pwn:

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon also contains other interesting chemical elements:

Argon (Ar) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon (pdb code 7pwn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7pwn

Go back to Sodium Binding Sites List in 7pwn
Sodium binding site 1 out of 2 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1101

b:24.3
occ:1.00
O A:ILE88 2.1 22.8 1.0
O A:ILE94 2.2 21.5 1.0
O A:HOH1411 2.4 31.8 1.0
O A:TYR91 2.6 20.5 1.0
OE1 A:GLU136 2.7 32.1 1.0
C A:ILE88 3.2 21.6 1.0
O A:ASN92 3.2 35.3 1.0
C A:ILE94 3.4 18.8 1.0
CD A:GLU136 3.5 43.3 1.0
CA A:ILE88 3.6 21.4 1.0
C A:ASN92 3.6 28.0 1.0
C A:TYR91 3.6 24.6 1.0
OE2 A:GLU136 3.8 49.5 1.0
CA A:ASN92 3.8 30.7 1.0
N A:ILE94 4.0 20.5 1.0
CB A:ILE88 4.1 19.8 1.0
N A:ASN92 4.2 26.6 1.0
CA A:ILE94 4.2 18.7 1.0
O A:HOH1448 4.2 36.4 1.0
ND1 A:HIS95 4.3 34.8 1.0
N A:HIS95 4.3 18.3 1.0
N A:GLU89 4.4 23.0 1.0
N A:HIS93 4.4 25.3 1.0
CA A:HIS95 4.6 20.5 1.0
CB A:ILE94 4.7 18.2 1.0
O A:PHE87 4.7 20.5 1.0
CG A:GLU136 4.7 39.2 1.0
CA A:TYR91 4.8 22.2 1.0
C A:HIS93 4.8 21.4 1.0
N A:TYR91 4.9 21.5 1.0
CE1 A:HIS95 4.9 30.2 1.0
CG2 A:ILE88 4.9 23.4 1.0
N A:ILE88 4.9 19.8 1.0
CA A:GLU89 5.0 24.2 1.0

Sodium binding site 2 out of 2 in 7pwn

Go back to Sodium Binding Sites List in 7pwn
Sodium binding site 2 out of 2 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1101

b:18.9
occ:1.00
O B:ILE94 2.2 16.1 1.0
O B:ILE88 2.2 19.4 1.0
O B:HOH1420 2.4 25.1 1.0
O B:TYR91 2.6 16.1 1.0
OE1 B:GLU136 2.7 30.2 1.0
O B:ASN92 3.0 27.1 1.0
C B:ILE88 3.3 17.7 1.0
C B:ILE94 3.4 15.9 1.0
CD B:GLU136 3.5 35.7 1.0
C B:ASN92 3.5 23.9 1.0
C B:TYR91 3.6 20.3 1.0
CA B:ILE88 3.7 16.4 1.0
CA B:ASN92 3.8 24.6 1.0
OE2 B:GLU136 3.8 39.4 1.0
N B:ILE94 4.0 16.2 1.0
ND1 B:HIS95 4.1 28.7 1.0
N B:ASN92 4.1 21.9 1.0
CB B:ILE88 4.2 17.6 1.0
CA B:ILE94 4.2 15.2 1.0
O B:HOH1445 4.3 30.6 1.0
N B:HIS93 4.4 21.0 1.0
N B:HIS95 4.4 16.4 1.0
N B:GLU89 4.5 17.7 1.0
CE1 B:HIS95 4.6 27.5 1.0
CA B:HIS95 4.6 16.0 1.0
CG B:GLU136 4.7 30.7 1.0
CB B:ILE94 4.7 15.0 1.0
O B:PHE87 4.7 15.4 1.0
CA B:TYR91 4.8 18.4 1.0
C B:HIS93 4.8 17.0 1.0
N B:TYR91 4.9 18.0 1.0
CG2 B:ILE88 4.9 18.2 1.0
N B:ILE88 5.0 15.4 1.0
CA B:GLU89 5.0 18.7 1.0

Reference:

T.Prange, P.Carpentier, A.C.Dhaussy, E.Girard, N.Colloc'h. Comparative Study of the Effects of High Hydrostatic Pressure Per Se and High Argon Pressure on Urate Oxidase Ligand Stabilization Acta Cryst. D V. 78 162 2022.
DOI: 10.1107/S2059798321012134
Page generated: Tue Oct 8 18:33:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy