Atomistry » Sodium » PDB 7o1y-7opy » 7ol6
Atomistry »
  Sodium »
    PDB 7o1y-7opy »
      7ol6 »

Sodium in PDB 7ol6: Crystal Structure of Lysozyme in Complex with Imidazole

Enzymatic activity of Crystal Structure of Lysozyme in Complex with Imidazole

All present enzymatic activity of Crystal Structure of Lysozyme in Complex with Imidazole:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme in Complex with Imidazole, PDB code: 7ol6 was solved by A.Camara-Artigas, M.C.Salinas-Garcia, M.Plaza-Garrido, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.54 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.418, 55.238, 66.174, 90, 90, 90
R / Rfree (%) 14.7 / 16

Other elements in 7ol6:

The structure of Crystal Structure of Lysozyme in Complex with Imidazole also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysozyme in Complex with Imidazole (pdb code 7ol6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysozyme in Complex with Imidazole, PDB code: 7ol6:

Sodium binding site 1 out of 1 in 7ol6

Go back to Sodium Binding Sites List in 7ol6
Sodium binding site 1 out of 1 in the Crystal Structure of Lysozyme in Complex with Imidazole


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme in Complex with Imidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:14.2
occ:0.92
O A:SER60 2.3 14.0 1.0
O A:CYS64 2.4 13.4 1.0
O A:ARG73 2.4 15.1 1.0
O A:HOH394 2.5 18.4 1.0
O A:HOH358 2.5 17.9 1.0
OG A:SER72 2.6 17.5 1.0
HB2 A:SER72 2.8 22.2 1.0
HA A:ASN65 3.0 16.9 1.0
CB A:SER72 3.2 18.5 1.0
C A:ARG73 3.4 15.8 1.0
C A:SER60 3.4 12.8 1.0
C A:CYS64 3.4 12.4 1.0
HB2 A:SER60 3.6 14.9 1.0
H A:ARG73 3.7 19.9 1.0
N A:ARG73 3.7 16.6 1.0
H A:CYS64 3.8 15.4 1.0
HA A:SER60 3.8 15.6 1.0
HB3 A:SER72 3.9 22.2 1.0
CA A:ASN65 3.9 14.0 1.0
HB A:THR69 3.9 18.0 1.0
HB2 A:ASN74 4.0 20.4 1.0
H A:ASP66 4.0 15.4 1.0
C A:SER72 4.0 17.8 1.0
N A:ASN65 4.1 13.4 1.0
CA A:SER60 4.1 13.0 1.0
CA A:ARG73 4.2 16.2 1.0
HA A:ASN74 4.2 19.2 1.0
HA A:ARG61 4.3 17.6 1.0
CA A:SER72 4.3 18.8 1.0
CB A:SER60 4.3 12.4 1.0
C A:ARG61 4.3 14.2 1.0
O A:ARG61 4.4 15.0 1.0
N A:CYS64 4.4 12.8 1.0
N A:ASN74 4.4 16.6 1.0
N A:ARG61 4.5 13.6 1.0
HA A:ARG73 4.5 19.4 1.0
O A:HOH408 4.6 15.2 1.0
CA A:CYS64 4.6 12.8 1.0
CA A:ARG61 4.6 14.7 1.0
CA A:ASN74 4.6 16.0 1.0
HB2 A:ASN65 4.6 19.5 1.0
N A:ASP66 4.7 12.8 1.0
O A:SER72 4.7 19.9 1.0
H A:TRP63 4.7 16.0 1.0
N A:TRP62 4.7 15.1 1.0
CB A:ASN74 4.7 17.0 1.0
CB A:THR69 4.8 15.0 1.0
CB A:ASN65 4.8 16.2 1.0
C A:ASN65 4.8 12.9 1.0
O A:HOH417 4.8 28.0 1.0
H A:ASN65 4.9 16.1 1.0
HA A:SER72 4.9 22.6 1.0
HG21 A:THR69 4.9 15.8 1.0
N A:TRP63 4.9 13.3 1.0
C A:TRP62 5.0 14.4 1.0
HB3 A:SER60 5.0 14.9 1.0

Reference:

A.Camara-Artigas, M.C.Salinas-Garcia, M.Plaza-Garrido. Crystal Structure of Lysozyme in Complex with Imidazole To Be Published.
Page generated: Tue Oct 8 18:21:06 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy