Sodium in PDB 7oi2: Saftsz Complexed with Gdp (Nacl Purification)

The structure of Saftsz Complexed with Gdp (Nacl Purification), PDB code: 7oi2 was solved by C.Fernandez-Tornero, F.M.Ruiz, J.M.Andreu Morales, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.61 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.187, 53.754, 85.349, 90, 108.21, 90
R / Rfree (%)	17.2 / 23.4

The binding sites of Sodium atom in the Saftsz Complexed with Gdp (Nacl Purification) (pdb code 7oi2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Saftsz Complexed with Gdp (Nacl Purification), PDB code: 7oi2:

Sodium binding site 1 out of 1 in the Saftsz Complexed with Gdp (Nacl Purification)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Saftsz Complexed with Gdp (Nacl Purification) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:24.9 occ:1.00 O A:VAL203 2.2 35.3 1.0 O A:HOH666 2.3 30.0 1.0 OD1 A:ASN208 2.3 28.2 1.0 O A:LEU200 2.3 34.1 1.0 O A:LEU209 2.4 25.9 1.0 CG A:ASN208 3.2 29.2 1.0 C A:VAL203 3.4 35.4 1.0 C A:LEU200 3.5 34.4 1.0 ND2 A:ASN208 3.5 28.6 1.0 C A:LEU209 3.6 26.9 1.0 N A:LEU209 4.0 26.1 1.0 N A:GLY205 4.1 34.5 1.0 CA A:LEU200 4.2 33.1 1.0 CA A:SER204 4.2 34.8 1.0 N A:SER204 4.3 36.1 1.0 N A:VAL203 4.4 32.3 1.0 CA A:LEU209 4.4 25.0 1.0 CA A:VAL203 4.4 37.9 1.0 N A:ASP210 4.5 26.9 1.0 N A:ILE201 4.5 29.9 1.0 CA A:ASP210 4.5 24.7 1.0 CB A:ASN208 4.5 29.0 1.0 O A:HOH514 4.6 22.0 1.0 CD2 A:LEU200 4.6 33.0 1.0 C A:SER204 4.7 36.5 1.0 CG A:LEU200 4.7 38.2 1.0 CA A:ILE201 4.7 28.5 1.0 C A:ILE201 4.7 29.4 1.0 O A:ILE201 4.8 34.7 1.0 O A:HOH652 4.8 33.0 1.0 CA A:ASN208 4.8 28.3 1.0 CB A:ASP210 4.8 26.0 1.0 C A:ASN208 4.8 27.0 1.0 CB A:LEU200 4.9 34.2 1.0 CB A:VAL203 4.9 40.0 1.0

F.M.Ruiz, S.Huecas, A.Santos-Aledo, E.A.Prim, J.M.Andreu, C.Fernandez-Tornero. Ftsz Filament Structures in Different Nucleotide States Reveal the Mechanism of Assembly Dynamics. Plos Biol. V. 20 01497 2022.
ISSN: ESSN 1545-7885
PubMed: 35312677
DOI: 10.1371/JOURNAL.PBIO.3001497