Sodium in PDB 7ofz: Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna

The structure of Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna, PDB code: 7ofz was solved by P.Lukacik, C.D.Owen, J.E.Nettleship, L.E.Bird, R.J.Owens, M.A.Walsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.20 / 2.62
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	144.4, 144.4, 62.03, 90, 90, 90
R / Rfree (%)	21.7 / 26.3

The binding sites of Sodium atom in the Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna (pdb code 7ofz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna, PDB code: 7ofz:

Sodium binding site 1 out of 1 in the Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Nontypeable Haemophillus Influenzae Sapa in Complex with Double Stranded Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:66.3 occ:1.00 O A:GLU480 2.3 60.5 1.0 O A:LYS478 2.5 68.0 1.0 O A:ASN483 2.9 59.0 1.0 OD1 A:ASN486 3.0 62.7 1.0 N A:GLU480 3.2 62.6 1.0 C A:GLU480 3.3 61.5 1.0 C A:LYS478 3.6 67.8 1.0 CG A:ASN486 3.8 75.1 1.0 C A:ASN483 3.8 57.6 1.0 CA A:GLU480 3.9 60.6 1.0 C A:ASN479 3.9 68.2 1.0 CA A:ASN479 3.9 64.7 1.0 ND2 A:ASN486 4.2 67.2 1.0 N A:ASN479 4.2 64.3 1.0 O A:THR477 4.3 65.6 1.0 N A:LEU481 4.4 57.1 1.0 N A:LEU484 4.6 54.8 1.0 CA A:ASN483 4.7 50.6 1.0 CA A:LEU484 4.7 54.7 1.0 CA A:LYS478 4.8 63.1 1.0 N A:ASN483 4.8 50.4 1.0 CA A:ASN486 4.8 58.2 1.0 O A:ASN479 4.8 68.4 1.0 CB A:ASN486 4.9 58.8 1.0 CA A:LEU481 4.9 57.0 1.0 CB A:ASN483 4.9 48.4 1.0 N A:ASN486 4.9 58.4 1.0

P.Lukacik, C.D.Owen, G.Harris, J.R.Bolla, S.Picaud, I.Alibay, J.E.Nettleship, L.E.Bird, R.J.Owens, P.C.Biggin, P.Filippakopoulos, C.V.Robinson, M.A.Walsh. The Structure of Nontypeable Haemophilus Influenzae Sapa in A Closed Conformation Reveals A Constricted Ligand-Binding Cavity and A Novel Rna Binding Motif. Plos One V. 16 56070 2021.
ISSN: ESSN 1932-6203
PubMed: 34653190
DOI: 10.1371/JOURNAL.PONE.0256070