Sodium in PDB 7o9o: Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata

Protein crystallography data

The structure of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata, PDB code: 7o9o was solved by V.Reithofer, P.De Groot, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.28 / 1.55
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 147.97, 147.97, 117.77, 90, 90, 120
R / Rfree (%) 15.9 / 18.8

Other elements in 7o9o:

The structure of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata (pdb code 7o9o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata, PDB code: 7o9o:

Sodium binding site 1 out of 1 in 7o9o

Go back to Sodium Binding Sites List in 7o9o
Sodium binding site 1 out of 1 in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:24.1
occ:0.95
O A:ALA324 2.3 23.3 1.0
OD1 A:ASN326 2.3 24.9 1.0
O A:SER317 2.4 20.4 1.0
O A:HOH773 2.4 29.1 1.0
O A:HOH725 2.8 38.2 1.0
O A:HOH534 3.2 30.8 1.0
H A:ASN326 3.3 20.6 1.0
N A:ASN326 3.3 17.2 1.0
C A:ALA324 3.3 21.1 1.0
CG A:ASN326 3.4 19.5 1.0
C A:SER317 3.5 18.6 1.0
C A:ASP325 3.5 20.1 1.0
HA A:SER317 3.6 21.2 1.0
HA A:ASN326 3.6 24.5 1.0
HB2 A:SER317 3.8 28.4 1.0
HA A:ASP325 3.8 18.9 1.0
CA A:ASN326 3.9 20.4 1.0
O A:ASP325 3.9 20.4 1.0
HA A:ALA324 4.0 31.5 1.0
CA A:SER317 4.0 17.7 1.0
CA A:ASP325 4.0 15.8 1.0
N A:ASP325 4.1 18.3 1.0
HD21 A:ASN326 4.2 33.4 1.0
ND2 A:ASN326 4.2 27.8 1.0
CB A:ASN326 4.2 16.8 1.0
CA A:ALA324 4.3 26.3 1.0
O A:HOH668 4.3 46.6 1.0
HA3 A:GLY318 4.4 23.2 1.0
CB A:SER317 4.4 23.7 1.0
N A:GLY318 4.6 16.9 1.0
HB1 A:ALA324 4.6 37.1 1.0
O A:HOH833 4.7 19.7 1.0
HB2 A:ASN326 4.8 20.2 1.0
H A:ASP325 4.8 21.9 1.0
HB3 A:ASN326 4.9 20.2 1.0
HD22 A:ASN326 5.0 33.4 1.0

Reference:

V.Reithofer, J.Fernandez-Pereira, M.Alvarado, P.De Groot, L.-O.Essen. A Novel Class of Candida Glabrata Cell Wall Proteins with Beta-Helix Fold Mediates Adhesion in Clinical Isolates Plos Pathog. 2021.
ISSN: ESSN 1553-7374
Page generated: Fri Dec 17 11:21:05 2021

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