Sodium in PDB 7o9o: Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata

The structure of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata, PDB code: 7o9o was solved by V.Reithofer, P.De Groot, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.28 / 1.55
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	147.97, 147.97, 117.77, 90, 90, 120
R / Rfree (%)	15.9 / 18.8

The structure of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata (pdb code 7o9o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata, PDB code: 7o9o:

Sodium binding site 1 out of 1 in the Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the AWP3B (Adhesin-Like Wall Protein 3B) A-Domain From Candida Glabrata within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:24.1 occ:0.95 O A:ALA324 2.3 23.3 1.0 OD1 A:ASN326 2.3 24.9 1.0 O A:SER317 2.4 20.4 1.0 O A:HOH773 2.4 29.1 1.0 O A:HOH725 2.8 38.2 1.0 O A:HOH534 3.2 30.8 1.0 H A:ASN326 3.3 20.6 1.0 N A:ASN326 3.3 17.2 1.0 C A:ALA324 3.3 21.1 1.0 CG A:ASN326 3.4 19.5 1.0 C A:SER317 3.5 18.6 1.0 C A:ASP325 3.5 20.1 1.0 HA A:SER317 3.6 21.2 1.0 HA A:ASN326 3.6 24.5 1.0 HB2 A:SER317 3.8 28.4 1.0 HA A:ASP325 3.8 18.9 1.0 CA A:ASN326 3.9 20.4 1.0 O A:ASP325 3.9 20.4 1.0 HA A:ALA324 4.0 31.5 1.0 CA A:SER317 4.0 17.7 1.0 CA A:ASP325 4.0 15.8 1.0 N A:ASP325 4.1 18.3 1.0 HD21 A:ASN326 4.2 33.4 1.0 ND2 A:ASN326 4.2 27.8 1.0 CB A:ASN326 4.2 16.8 1.0 CA A:ALA324 4.3 26.3 1.0 O A:HOH668 4.3 46.6 1.0 HA3 A:GLY318 4.4 23.2 1.0 CB A:SER317 4.4 23.7 1.0 N A:GLY318 4.6 16.9 1.0 HB1 A:ALA324 4.6 37.1 1.0 O A:HOH833 4.7 19.7 1.0 HB2 A:ASN326 4.8 20.2 1.0 H A:ASP325 4.8 21.9 1.0 HB3 A:ASN326 4.9 20.2 1.0 HD22 A:ASN326 5.0 33.4 1.0

V.Reithofer, J.Fernandez-Pereira, M.Alvarado, P.De Groot, L.-O.Essen. A Novel Class of Candida Glabrata Cell Wall Proteins with Beta-Helix Fold Mediates Adhesion in Clinical Isolates Plos Pathog. 2021.
ISSN: ESSN 1553-7374