Sodium in PDB 7o3e: Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation

Enzymatic activity of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation

All present enzymatic activity of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation:
7.1.1.8; 7.1.1.9;

Other elements in 7o3e:

The structure of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation also contains other interesting chemical elements:

Iron (Fe) 8 atoms
Zinc (Zn) 1 atom
Copper (Cu) 3 atoms
Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation (pdb code 7o3e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation, PDB code: 7o3e:

Sodium binding site 1 out of 1 in 7o3e

Go back to Sodium Binding Sites List in 7o3e
Sodium binding site 1 out of 1 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Na602

b:30.0
occ:1.00
O a:GLY45 2.4 55.8 1.0
O a:GLU40 2.4 38.2 1.0
O a:SER441 2.6 33.2 1.0
CD a:GLU40 2.6 115.1 1.0
OE2 a:GLU40 2.7 118.6 1.0
OE1 a:GLU40 2.7 119.4 1.0
CG a:GLU40 3.4 83.6 1.0
C a:GLU40 3.4 27.5 1.0
C a:GLY45 3.6 63.8 1.0
OD1 a:ASP442 3.8 67.9 1.0
C a:SER441 3.8 24.8 1.0
CA a:GLU40 4.0 27.1 1.0
CA a:ALA46 4.1 67.9 1.0
O a:GLN43 4.1 36.5 1.0
CB a:GLU40 4.2 46.2 1.0
N a:ALA46 4.3 71.1 1.0
N a:LEU41 4.4 22.9 1.0
N a:LEU47 4.4 60.1 1.0
CA a:ASP442 4.5 28.1 1.0
N a:GLY45 4.6 36.5 1.0
N a:ASP442 4.6 25.0 1.0
CA a:LEU41 4.7 17.7 1.0
CA a:GLY45 4.7 42.3 1.0
CG a:ASP442 4.7 55.9 1.0
CB a:ASP442 4.7 39.7 1.0
CA a:SER441 4.8 26.3 1.0
C a:ALA46 4.8 57.4 1.0

Reference:

I.Vercellino, L.A.Sazanov. Structure and Assembly of the Mammalian Mitochondrial Supercomplex CIII2CIV Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03927-Z
Page generated: Fri Nov 5 16:05:33 2021

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