Sodium in PDB 7nzj: Structure of Bstrmb Apo

All present enzymatic activity of Structure of Bstrmb Apo:
2.1.1.33;

The structure of Structure of Bstrmb Apo, PDB code: 7nzj was solved by K.F.Blersch, R.Ficner, P.Neumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.53 / 1.98
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.62, 103.68, 103.69, 118.12, 97.91, 97.84
R / Rfree (%)	18.7 / 22.3

The binding sites of Sodium atom in the Structure of Bstrmb Apo (pdb code 7nzj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Bstrmb Apo, PDB code: 7nzj:

Sodium binding site 1 out of 1 in the Structure of Bstrmb Apo


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Bstrmb Apo within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:62.4 occ:1.00 O E:HOH558 2.3 50.9 1.0 O A:VAL34 3.6 41.2 1.0 OD2 E:ASP118 3.7 42.3 1.0 CA A:GLY36 3.8 42.4 1.0 N A:GLY36 3.9 44.1 1.0 O A:THR33 3.9 42.3 1.0 C A:PHE35 4.0 40.5 1.0 O A:PHE35 4.1 40.8 1.0 OD1 E:ASP118 4.2 44.2 1.0 C A:VAL34 4.3 38.9 1.0 CE1 E:PHE71 4.3 51.4 1.0 CG E:ASP118 4.3 41.0 1.0 O1 E:GOL401 4.5 55.6 1.0 O E:HOH576 4.6 47.5 1.0 CA A:PHE35 4.8 42.3 1.0 N A:PHE35 4.9 40.3 1.0 CZ E:PHE71 4.9 46.6 1.0 C A:THR33 5.0 38.8 1.0 CD1 E:PHE71 5.0 47.4 1.0

K.F.Blersch, J.P.Burchert, S.C.August, L.Welp, P.Neumann, S.Koster, H.Urlaub, R.Ficner. Structural Model of the M7G46 Methyltransferase Trmb in Complex with Trna. Rna Biol. 1 2021.
ISSN: ESSN 1555-8584
PubMed: 34006170
DOI: 10.1080/15476286.2021.1925477