Sodium in PDB 7nf5: Crystal Structure of Mg-132 Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 in Spacegroup C2.

Enzymatic activity of Crystal Structure of Mg-132 Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 in Spacegroup C2.

Protein crystallography data

Other elements in 7nf5:

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 7nf5

Sodium Binding Sites List in 7nf5

Sodium binding site 1 out of 1 in the Crystal Structure of Mg-132 Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 in Spacegroup C2.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mg-132 Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 in Spacegroup C2. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na411 b:49.9 occ:1.00 OD1 A:ASP229 2.2 42.1 1.0 OD1 A:ASN228 2.5 40.5 1.0 HB3 A:ASN228 2.7 44.7 1.0 O A:HOH553 2.8 33.7 1.0 CG A:ASN228 3.2 42.4 1.0 CG A:ASP229 3.4 45.3 1.0 CB A:ASN228 3.4 37.3 1.0 HA A:ASP229 3.5 40.3 1.0 N A:ASP229 3.6 34.4 1.0 H A:ASP229 3.7 41.3 1.0 HG1 A:THR226 3.8 42.9 1.0 C A:ASN228 3.8 35.3 1.0 HD12 A:LEU232 3.9 59.4 1.0 CA A:ASP229 3.9 33.6 1.0 HD11 A:LEU232 4.1 59.4 1.0 HB2 A:ASN228 4.1 44.7 1.0 OD2 A:ASP229 4.2 47.6 1.0 CB A:ASP229 4.2 35.0 1.0 OG1 A:THR226 4.2 35.8 1.0 CA A:ASN228 4.2 36.8 1.0 O A:ASN228 4.3 33.6 1.0 HG A:LEU232 4.4 47.0 1.0 CD1 A:LEU232 4.5 49.5 1.0 ND2 A:ASN228 4.5 44.6 1.0 HB2 A:ASP229 4.6 42.0 1.0 HD21 A:ASN228 4.8 53.5 1.0 H A:ASN228 4.9 38.9 1.0 HA A:ASN228 4.9 44.1 1.0 HB3 A:ASP229 5.0 42.0 1.0

Reference: