Sodium in PDB 7neb: Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant)

Enzymatic activity of Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant)

All present enzymatic activity of Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant):
2.6.1.42;

Protein crystallography data

The structure of Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant), PDB code: 7neb was solved by K.M.Boyko, T.Petrova, A.Y.Nikolaeva, Y.S.Zeifman, T.V.Rakitina, D.A.Suplatov, V.O.Popov, E.Y.Bezsudnova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 94.47 / 2.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 146.02, 146.02, 142.115, 90, 90, 120
R / Rfree (%) 20.6 / 25.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant) (pdb code 7neb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant), PDB code: 7neb:

Sodium binding site 1 out of 1 in 7neb

Go back to Sodium Binding Sites List in 7neb
Sodium binding site 1 out of 1 in the Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:34.9
occ:1.00
NE2 A:GLN85 3.3 37.1 1.0
NH2 A:ARG92 3.4 37.8 1.0
NH1 A:ARG92 4.0 41.8 1.0
CG2 A:ILE88 4.2 37.8 1.0
CZ A:ARG92 4.2 37.0 1.0
CD A:GLN85 4.2 41.4 1.0
OE1 A:GLN85 4.3 40.6 1.0
OD1 A:ASP89 4.5 38.2 1.0

Reference:

E.Y.Bezsudnova, K.M.Boyko, T.Petrova, A.Y.Nikolaeva, Y.S.Zeifman, T.V.Rakitina, D.A.Suplatov, V.O.Popov. Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant). To Be Published.
Page generated: Mon Jul 12 16:03:16 2021

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