Sodium in PDB 7ncv: Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii

The structure of Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii, PDB code: 7ncv was solved by T.Roret, C.Didierjean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.53 / 1.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	45.648, 45.648, 104.667, 90, 90, 120
R / Rfree (%)	15.3 / 18

The binding sites of Sodium atom in the Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii (pdb code 7ncv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii, PDB code: 7ncv:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:32.6 occ:1.00 O A:LYS44 2.5 22.9 0.5 O A:HOH376 2.8 23.9 1.0 O A:HOH322 2.8 35.6 1.0 O A:LYS44 3.1 23.3 0.5 C A:LYS44 3.5 17.7 0.5 C A:LYS44 3.7 21.9 0.5 CB A:ALA106 4.0 21.2 1.0 CB A:TYR45 4.1 20.6 1.0 CA A:TYR45 4.1 20.8 1.0 CB A:LYS44 4.1 20.6 0.5 CD1 A:ILE41 4.2 20.8 1.0 N A:TYR45 4.3 19.4 1.0 CG2 A:VAL19 4.3 18.4 1.0 CB A:LYS44 4.3 21.9 0.5 CB A:VAL19 4.4 15.8 1.0 CB A:LYS18 4.5 18.1 1.0 CA A:LYS44 4.5 21.4 0.5 CA A:LYS44 4.6 16.0 0.5 CA A:ALA106 4.6 19.8 1.0 N A:VAL19 4.7 16.3 1.0 O A:ALA106 4.9 23.8 1.0 O A:HOH314 4.9 25.4 1.0 O A:HOH433 4.9 36.5 0.5

Sodium binding site 2 out of 2 in the Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:29.4 occ:1.00 O A:HOH342 2.7 26.2 1.0 N A:ASN52 2.8 20.9 1.0 O A:GLU49 2.8 19.9 1.0 CB A:ASN52 3.3 22.1 1.0 CA A:ASN52 3.4 23.2 1.0 C A:GLU49 3.5 17.8 1.0 N A:GLU51 3.5 19.9 1.0 C A:LEU50 3.7 21.0 1.0 C A:ASN52 3.7 23.9 1.0 O A:HOH338 3.7 19.9 1.0 N A:ARG53 3.8 21.8 1.0 N A:LEU50 3.9 17.6 1.0 C A:GLU51 3.9 23.4 1.0 CD A:GLU51 4.0 20.6 1.0 CA A:LEU50 4.0 17.9 1.0 CB A:GLU49 4.0 19.2 1.0 CG A:ASN52 4.1 28.1 1.0 OE1 A:GLU51 4.1 22.7 1.0 OE2 A:GLU51 4.2 24.7 1.0 O A:LEU50 4.2 21.1 1.0 CA A:GLU51 4.3 21.5 1.0 ND2 A:ASN52 4.3 33.3 1.0 CG A:ARG53 4.4 21.8 1.0 CA A:GLU49 4.4 18.3 1.0 CG A:GLU51 4.4 23.0 1.0 O A:ASN52 4.5 25.1 1.0 CA A:ARG53 4.8 21.2 1.0 OD1 A:ASN52 4.9 37.0 1.0 CB A:GLU51 5.0 23.5 1.0

T.Roret, B.Zhang, A.Moseler, T.Dhalleine, X.H.Gao, J.Couturier, S.D.Lemaire, C.Didierjean, M.K.Johnson, N.Rouhier. Atypical Iron-Sulfur Cluster Binding, Redox Activity and Structural Properties of Chlamydomonas Reinhardtii Glutaredoxin 2 To Be Published.
DOI: 10.3390/ANTIOX10050803