Sodium in PDB 7n7h: X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis

The structure of X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis, PDB code: 7n7h was solved by T.L.Grove, S.C.Almo, J.B.Bonanno, J.C.Lachowicz, A.G.Gizzi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.11 / 1.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.875, 50.533, 137.746, 90, 90, 90
R / Rfree (%)	15.2 / 17.2

The structure of X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Sodium atom in the X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis (pdb code 7n7h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis, PDB code: 7n7h:

Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of Viperin-Like Enzyme From Nematostella Vectensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:26.8 occ:1.00 O A:HOH526 2.6 26.0 1.0 OG1 A:THR24 2.7 12.4 1.0 O A:GLY186 2.9 15.9 1.0 N A:LEU194 3.0 15.8 1.0 O A:GLU187 3.3 12.3 1.0 CG A:LYS26 3.5 24.4 1.0 CG A:LEU194 3.6 15.1 1.0 CA A:GLU187 3.6 11.0 1.0 CA A:ALA193 3.6 18.4 1.0 CD A:LYS26 3.7 23.1 1.0 CB A:LEU194 3.7 14.6 1.0 C A:GLY186 3.8 12.3 1.0 CB A:THR24 3.8 11.6 1.0 C A:ALA193 3.8 16.9 1.0 C A:GLU187 3.9 11.4 1.0 CA A:LEU194 4.0 17.8 1.0 CD1 A:LEU194 4.1 15.8 1.0 N A:GLU187 4.1 11.3 1.0 CG2 A:THR24 4.1 13.0 1.0 CE A:LYS26 4.1 25.7 1.0 OE1 A:GLU187 4.2 13.5 1.0 CB A:ALA193 4.2 18.9 1.0 O A:ASP192 4.4 27.3 1.0 O A:HOH693 4.6 36.0 1.0 O A:HOH683 4.7 47.0 1.0 NZ A:LYS26 4.7 28.6 1.0 N A:ALA193 4.8 20.3 1.0 CB A:GLU187 4.8 12.2 1.0 N A:ARG195 4.8 14.5 1.0 CD A:GLU187 4.8 11.7 1.0 C A:LEU194 4.9 16.9 1.0 CD2 A:LEU194 5.0 18.9 1.0 O A:ALA193 5.0 21.2 1.0 C A:ASP192 5.0 27.6 1.0

J.C.Lachowicz, A.G.Gizzi, S.C.Almo, T.L.Grove. Structural Insight Into the Substrate Scope of Viperin and Viperin-Like Enzymes From Three Domains of Life To Be Published.