Sodium in PDB 7lqj: Crystal Structure of Leut Bound to L-Alanine

The structure of Crystal Structure of Leut Bound to L-Alanine, PDB code: 7lqj was solved by J.Font, J.Aguilar, A.Galli, R.Ryan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.99 / 2.14
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.484, 86.866, 81.145, 90, 96.09, 90
R / Rfree (%)	16.7 / 19.7

The binding sites of Sodium atom in the Crystal Structure of Leut Bound to L-Alanine (pdb code 7lqj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Leut Bound to L-Alanine, PDB code: 7lqj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Leut Bound to L-Alanine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Leut Bound to L-Alanine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:33.1 occ:1.00 OD1 A:ASN27 2.2 31.3 1.0 O A:THR254 2.3 31.4 1.0 OG1 A:THR254 2.5 32.3 1.0 OD1 A:ASN286 2.5 30.6 1.0 O A:ALA22 2.6 30.7 1.0 O A:ALA801 2.7 31.0 1.0 C A:THR254 3.0 31.2 1.0 CA A:THR254 3.1 33.5 1.0 CG A:ASN27 3.1 33.8 1.0 C A:ALA22 3.3 31.8 1.0 CB A:THR254 3.3 31.9 1.0 CG A:ASN286 3.4 32.2 1.0 ND2 A:ASN27 3.5 33.4 1.0 ND2 A:ASN286 3.6 31.9 1.0 N A:ALA801 3.7 30.9 1.0 C A:ALA801 3.7 30.8 1.0 CA A:VAL23 3.9 36.4 1.0 N A:VAL23 3.9 34.5 1.0 N A:GLY24 4.0 31.2 1.0 OE2 A:GLU290 4.1 36.5 1.0 CA A:ALA22 4.2 30.9 1.0 CA A:ALA801 4.2 30.8 1.0 N A:ASN27 4.3 30.5 1.0 N A:LEU255 4.3 29.7 1.0 CG2 A:THR254 4.4 31.2 1.0 C A:VAL23 4.4 33.1 1.0 CB A:ASN27 4.5 32.8 1.0 N A:THR254 4.5 32.5 1.0 CB A:ALA22 4.6 31.2 1.0 OXT A:ALA801 4.6 29.6 1.0 C A:GLY26 4.7 32.7 1.0 CA A:ASN27 4.8 34.0 1.0 CB A:ASN286 4.8 31.9 1.0 O A:PHE253 4.8 30.8 1.0 CA A:GLY26 4.9 30.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Leut Bound to L-Alanine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Leut Bound to L-Alanine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:32.8 occ:1.00 O A:VAL23 2.2 33.7 1.0 OG1 A:THR354 2.3 31.0 1.0 O A:GLY20 2.3 33.5 1.0 O A:ALA351 2.3 29.3 1.0 OG A:SER355 2.5 30.1 1.0 N A:SER355 2.8 29.7 1.0 C A:THR354 3.2 30.9 1.0 CB A:SER355 3.2 29.6 1.0 C A:VAL23 3.2 33.1 1.0 CB A:THR354 3.3 31.3 1.0 CA A:SER355 3.4 28.6 1.0 C A:ALA351 3.4 30.1 1.0 C A:GLY20 3.4 34.3 1.0 CA A:THR354 3.6 31.0 1.0 CA A:GLY24 3.6 29.7 1.0 N A:GLY24 3.8 31.2 1.0 O A:THR354 3.9 30.8 1.0 N A:THR354 4.0 29.0 1.0 CA A:ALA351 4.0 29.6 1.0 CA A:GLY20 4.0 35.6 1.0 CA A:VAL23 4.4 36.4 1.0 N A:VAL23 4.4 34.5 1.0 O A:PHE350 4.4 32.8 1.0 O A:ASN21 4.4 28.7 1.0 N A:GLY352 4.5 31.4 1.0 N A:ASN21 4.5 34.5 1.0 O A:GLY352 4.6 31.5 1.0 C A:ASN21 4.6 29.9 1.0 CG2 A:THR354 4.6 33.6 1.0 C A:GLY352 4.7 31.3 1.0 CA A:ASN21 4.8 32.9 1.0 CA A:GLY352 4.8 31.0 1.0 C A:SER355 4.9 30.9 1.0 C A:ALA22 4.9 31.8 1.0 CB A:ALA351 4.9 28.7 1.0 CB A:VAL23 4.9 35.6 1.0 O A:ALA22 5.0 30.7 1.0 C A:LEU353 5.0 31.2 1.0

J.Aguilar, M.Cheng, J.Font, A.Schwartz, K.Ledwitch, A.Duran, S.Mabry, A.Belovich, Y.Zhu, A.M.Carter, L.Shei, M.Kurian, C.Fenollar Ferrer, J.Meiler, R.Ryan, H.Mchaourab, I.Bahar, H.Matthies, A.Galli. Psychomotor Impairments and Therapeutic Implications Revealed By A Mutation Associated with Infantile Parkinsonism-Dystonia Elife 2021.
ISSN: ESSN 2050-084X
DOI: 10.7554/ELIFE.68039