Atomistry » Sodium » PDB 7kth-7la9 » 7l6c
Atomistry »
  Sodium »
    PDB 7kth-7la9 »
      7l6c »

Sodium in PDB 7l6c: Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad

Enzymatic activity of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad

All present enzymatic activity of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad:
1.3.1.9;

Protein crystallography data

The structure of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad, PDB code: 7l6c was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.31 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 206.66, 92.63, 98.13, 90, 118.32, 90
R / Rfree (%) 19 / 21.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad (pdb code 7l6c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad, PDB code: 7l6c:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in 7l6c

Go back to Sodium Binding Sites List in 7l6c
Sodium binding site 1 out of 4 in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:29.6
occ:1.00
 O A:HOH599 2.3 30.6 1.0
O A:HOH608 2.4 34.7 1.0
O A:ALA226 2.4 25.9 1.0
O A:HOH604 2.5 31.0 1.0
O A:ASP223 2.5 23.5 1.0
O A:GLN224 2.9 28.7 1.0
C A:GLN224 3.4 26.1 1.0
C A:ALA226 3.5 22.4 1.0
C A:ASP223 3.6 22.9 1.0
CA A:GLN224 3.8 23.5 1.0
N A:ALA226 4.0 21.6 1.0
O A:HOH547 4.0 44.5 1.0
N A:GLN224 4.2 24.0 1.0
N A:GLY229 4.2 24.2 1.0
CA A:ALA226 4.3 22.2 1.0
CA A:GLY229 4.3 25.6 1.0
C A:ARG225 4.3 24.9 1.0
N A:ARG225 4.4 24.4 1.0
O A:HOH427 4.4 34.6 1.0
N A:PRO227 4.5 22.0 1.0
O A:HOH487 4.5 37.6 1.0
O A:HOH420 4.6 39.7 1.0
CA A:PRO227 4.6 22.2 1.0
C A:PRO227 4.7 21.7 1.0
CB A:ALA226 4.7 21.8 1.0
O A:ARG225 4.7 22.7 1.0
O A:PRO227 4.8 27.4 1.0
CA A:ASP223 4.9 25.3 1.0
CA A:ARG225 4.9 25.0 1.0
OD1 A:ASP223 5.0 28.4 1.0

Sodium binding site 2 out of 4 in 7l6c

Go back to Sodium Binding Sites List in 7l6c
Sodium binding site 2 out of 4 in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na302

b:30.9
occ:1.00
 O B:HOH555 2.3 34.1 1.0
O B:ALA226 2.3 25.5 1.0
O B:HOH562 2.4 37.7 1.0
O B:HOH556 2.4 33.3 1.0
O B:ASP223 2.4 29.2 1.0
O B:GLN224 2.9 28.7 1.0
C B:GLN224 3.4 31.4 1.0
C B:ALA226 3.4 26.2 1.0
C B:ASP223 3.6 28.9 1.0
CA B:GLN224 3.8 31.1 1.0
N B:ALA226 3.9 23.8 1.0
CA B:ALA226 4.2 22.8 1.0
N B:GLY229 4.2 27.1 1.0
N B:GLN224 4.2 26.1 1.0
C B:ARG225 4.2 27.8 1.0
O B:HOH445 4.3 28.1 0.5
N B:ARG225 4.3 27.7 1.0
CA B:GLY229 4.3 28.0 1.0
O B:HOH465 4.4 37.9 1.0
N B:PRO227 4.4 25.2 1.0
CA B:PRO227 4.5 24.0 1.0
CB B:ALA226 4.6 21.4 1.0
C B:PRO227 4.7 26.9 1.0
O B:ARG225 4.7 27.5 1.0
O B:HOH507 4.8 31.1 0.4
CA B:ARG225 4.8 30.1 1.0
CA B:ASP223 4.8 30.9 1.0
O B:HOH507 4.9 30.4 0.6
O B:PRO227 4.9 28.7 1.0
OD1 B:ASP223 5.0 30.8 1.0

Sodium binding site 3 out of 4 in 7l6c

Go back to Sodium Binding Sites List in 7l6c
Sodium binding site 3 out of 4 in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na302

b:24.4
occ:1.00
 O C:HOH562 2.3 31.8 1.0
O C:ALA226 2.3 22.6 1.0
O C:HOH581 2.3 31.6 1.0
O C:ASP223 2.3 24.7 1.0
O C:HOH589 2.6 32.9 1.0
O C:GLN224 2.9 27.9 1.0
C C:ALA226 3.4 23.7 1.0
C C:GLN224 3.5 25.2 1.0
C C:ASP223 3.5 27.9 1.0
CA C:GLN224 3.8 27.9 1.0
N C:GLY229 4.0 24.1 1.0
N C:ALA226 4.0 22.8 1.0
O C:HOH490 4.0 39.5 1.0
N C:GLN224 4.1 27.0 1.0
CA C:GLY229 4.1 23.9 1.0
CA C:ALA226 4.2 22.9 1.0
O C:HOH438 4.3 43.4 1.0
O C:HOH536 4.3 40.3 1.0
N C:PRO227 4.4 23.0 1.0
C C:ARG225 4.4 24.2 1.0
CA C:PRO227 4.4 25.7 1.0
N C:ARG225 4.4 24.8 1.0
C C:PRO227 4.4 22.5 1.0
O C:PRO227 4.6 24.9 1.0
O C:HOH584 4.6 34.5 1.0
O C:HOH579 4.6 37.9 1.0
CB C:ALA226 4.7 22.2 1.0
CA C:ASP223 4.7 24.6 1.0
OD1 C:ASP223 4.8 26.4 1.0
O C:ARG225 4.8 25.7 1.0
CG C:ASP223 4.9 33.0 1.0
CA C:ARG225 4.9 25.3 0.6
N C:ILE228 4.9 23.0 1.0
CA C:ARG225 4.9 25.4 0.5
OD2 C:ASP223 5.0 31.7 1.0

Sodium binding site 4 out of 4 in 7l6c

Go back to Sodium Binding Sites List in 7l6c
Sodium binding site 4 out of 4 in the Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na302

b:26.9
occ:1.00
 O D:HOH548 2.2 31.3 1.0
O D:ALA226 2.3 24.9 1.0
O D:HOH557 2.4 33.9 1.0
O D:ASP223 2.5 27.6 1.0
O D:HOH562 2.6 35.1 1.0
O D:GLN224 2.8 30.8 1.0
O D:HOH403 3.3 35.2 1.0
C D:GLN224 3.4 30.9 1.0
C D:ALA226 3.5 29.8 1.0
C D:ASP223 3.6 27.5 1.0
CA D:GLN224 3.8 30.6 1.0
N D:ALA226 4.0 27.1 1.0
O D:HOH500 4.2 30.2 0.5
N D:GLN224 4.2 29.1 1.0
N D:GLY229 4.2 29.2 1.0
CA D:ALA226 4.2 25.2 1.0
C D:ARG225 4.3 28.1 1.0
N D:ARG225 4.3 28.2 1.0
CA D:GLY229 4.3 26.9 1.0
N D:PRO227 4.4 25.8 1.0
CA D:PRO227 4.5 27.9 1.0
C D:PRO227 4.6 28.5 1.0
O D:HOH515 4.6 40.4 1.0
O D:HOH531 4.6 39.5 1.0
O D:ARG225 4.7 26.5 1.0
O D:HOH528 4.7 37.5 1.0
CB D:ALA226 4.7 23.2 1.0
O D:PRO227 4.7 28.1 1.0
CA D:ARG225 4.8 31.6 1.0
O D:HOH546 4.9 45.6 1.0
CA D:ASP223 4.9 32.2 1.0
OD1 D:ASP223 5.0 30.0 1.0

Reference:

J.A.Abendroth, J.K.Yano, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad To Be Published.
Page generated: Tue Oct 8 17:34:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy