Sodium in PDB 7l5m: Crystal Structure of the Dib-Rm-Split Protein

Protein crystallography data

The structure of Crystal Structure of the Dib-Rm-Split Protein, PDB code: 7l5m was solved by N.G.Bozhanova, J.M.Harp, J.Meiler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.13 / 2.33
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.146, 57.146, 138.63, 90, 90, 90
R / Rfree (%) 23.9 / 27.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Dib-Rm-Split Protein (pdb code 7l5m). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Dib-Rm-Split Protein, PDB code: 7l5m:

Sodium binding site 1 out of 1 in 7l5m

Go back to Sodium Binding Sites List in 7l5m
Sodium binding site 1 out of 1 in the Crystal Structure of the Dib-Rm-Split Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Dib-Rm-Split Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:66.3
occ:1.00
N B:GLY176 4.0 62.0 1.0
CA B:PRO175 4.6 59.7 1.0
CA B:GLY176 4.7 65.3 1.0
C B:PRO175 4.8 57.4 1.0
O B:GLN174 4.9 48.7 1.0

Reference:

N.G.Bozhanova, J.M.Harp, B.J.Bender, A.S.Gavrikov, D.A.Gorbachev, M.S.Baranov, X.Zhang, K.A.Lukyanov, A.S.Mishin, J.Meiler. Computational Redesign of A Fluorogen Activating Protein with Rosetta Plos Comput.Biol. 2021.
ISSN: ESSN 1553-7358
Page generated: Fri Nov 5 16:04:36 2021

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