Sodium in PDB 7l2s: Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State

Sodium Binding Sites:

The binding sites of Sodium atom in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State (pdb code 7l2s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State, PDB code: 7l2s:

Sodium binding site 1 out of 1 in 7l2s

Go back to Sodium Binding Sites List in 7l2s
Sodium binding site 1 out of 1 in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na803

b:66.2
occ:1.00
O A:GLY643 2.4 40.9 1.0
O D:GLY643 2.4 40.0 1.0
O C:GLY643 2.4 40.8 1.0
O B:GLY643 2.5 41.2 1.0
C A:GLY643 3.5 40.9 1.0
C D:GLY643 3.5 40.0 1.0
C C:GLY643 3.6 40.8 1.0
C B:GLY643 3.6 41.2 1.0
CA A:GLY643 4.1 40.9 1.0
CA D:GLY643 4.2 40.0 1.0
CA C:GLY643 4.2 40.8 1.0
CA B:GLY643 4.2 41.2 1.0
SD D:MET644 4.3 39.9 1.0
SD C:MET644 4.3 39.6 1.0
SD A:MET644 4.3 40.5 1.0
SD B:MET644 4.3 40.9 1.0
N D:MET644 4.6 39.9 1.0
N A:MET644 4.6 40.5 1.0
N C:MET644 4.6 39.6 1.0
N B:MET644 4.7 40.9 1.0
CG A:MET644 4.8 40.5 1.0
CG D:MET644 4.8 39.9 1.0
CG C:MET644 4.8 39.6 1.0
CG B:MET644 4.9 40.9 1.0
CA D:MET644 4.9 39.9 1.0
CA A:MET644 4.9 40.5 1.0
CA C:MET644 5.0 39.6 1.0

Reference:

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012
Page generated: Fri Sep 24 16:27:30 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy