Sodium in PDB 7l2s: Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State

The binding sites of Sodium atom in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State (pdb code 7l2s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State, PDB code: 7l2s:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:66.2 occ:1.00 O A:GLY643 2.4 40.9 1.0 O D:GLY643 2.4 40.0 1.0 O C:GLY643 2.4 40.8 1.0 O B:GLY643 2.5 41.2 1.0 C A:GLY643 3.5 40.9 1.0 C D:GLY643 3.5 40.0 1.0 C C:GLY643 3.6 40.8 1.0 C B:GLY643 3.6 41.2 1.0 CA A:GLY643 4.1 40.9 1.0 CA D:GLY643 4.2 40.0 1.0 CA C:GLY643 4.2 40.8 1.0 CA B:GLY643 4.2 41.2 1.0 SD D:MET644 4.3 39.9 1.0 SD C:MET644 4.3 39.6 1.0 SD A:MET644 4.3 40.5 1.0 SD B:MET644 4.3 40.9 1.0 N D:MET644 4.6 39.9 1.0 N A:MET644 4.6 40.5 1.0 N C:MET644 4.6 39.6 1.0 N B:MET644 4.7 40.9 1.0 CG A:MET644 4.8 40.5 1.0 CG D:MET644 4.8 39.9 1.0 CG C:MET644 4.8 39.6 1.0 CG B:MET644 4.9 40.9 1.0 CA D:MET644 4.9 39.9 1.0 CA A:MET644 4.9 40.5 1.0 CA C:MET644 5.0 39.6 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012