Sodium in PDB 7l2r: Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Open State

The binding sites of Sodium atom in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Open State (pdb code 7l2r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Open State, PDB code: 7l2r:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Open State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Dktx-Bound Minimal TRPV1 at the Pre-Open State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:43.8 occ:1.00 O C:GLY643 2.4 58.8 1.0 O A:GLY643 2.5 58.2 1.0 O B:GLY643 2.5 60.3 1.0 O D:GLY643 2.6 61.5 1.0 C C:GLY643 3.6 58.8 1.0 C A:GLY643 3.7 58.2 1.0 C B:GLY643 3.7 60.3 1.0 C D:GLY643 3.8 61.5 1.0 CA C:GLY643 4.4 58.8 1.0 CA B:GLY643 4.4 60.3 1.0 CA A:GLY643 4.5 58.2 1.0 CA D:GLY643 4.6 61.5 1.0 N C:MET644 4.6 63.9 1.0 N A:MET644 4.7 62.9 1.0 N D:MET644 4.7 65.8 1.0 N B:MET644 4.7 63.2 1.0 CA A:MET644 4.8 62.9 1.0 CA C:MET644 4.8 63.9 1.0 CA D:MET644 4.8 65.8 1.0 CA B:MET644 4.9 63.2 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012