Sodium in PDB 7ktg: Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN), PDB code: 7ktg was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.07 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.07, 68.523, 110.738, 90, 90, 90
R / Rfree (%) 15.8 / 18.3

Other elements in 7ktg:

The structure of Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN) (pdb code 7ktg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN), PDB code: 7ktg:

Sodium binding site 1 out of 1 in 7ktg

Go back to Sodium Binding Sites List in 7ktg
Sodium binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:20.2
occ:1.00
O A:VAL246 2.3 19.6 1.0
O A:HOH856 2.3 33.8 1.0
O A:THR241 2.4 21.9 1.0
O A:ILE243 2.4 20.7 1.0
O P:HOH216 2.4 22.8 1.0
OP1 P:DT3 2.6 20.0 1.0
C A:VAL246 3.4 19.2 1.0
C A:ILE243 3.4 25.8 1.0
C A:THR241 3.5 20.3 1.0
P P:DT3 3.7 18.2 1.0
O P:HOH213 3.7 36.0 1.0
N A:VAL246 3.8 19.0 1.0
OP2 P:DT3 3.9 19.3 1.0
O P:HOH204 4.0 40.8 1.0
N A:ILE243 4.0 19.5 1.0
CA A:VAL246 4.1 19.3 1.0
C A:GLN242 4.1 22.2 1.0
CA A:THR241 4.1 20.7 1.0
N A:PHE244 4.2 21.3 1.0
N A:GLY245 4.2 20.4 1.0
CA A:PHE244 4.2 21.4 1.0
O A:HOH826 4.3 38.9 1.0
CA A:ILE243 4.3 20.1 1.0
O A:GLN242 4.4 27.4 1.0
CB A:VAL246 4.4 18.8 1.0
N A:GLN242 4.4 22.5 1.0
N A:GLY247 4.4 19.7 1.0
O A:HOH850 4.5 47.0 1.0
O A:HOH883 4.5 36.2 1.0
CA A:GLN242 4.5 24.7 1.0
C A:PHE244 4.6 19.5 1.0
O3' P:DG2 4.7 19.7 1.0
O A:PHE240 4.8 21.1 1.0
CA A:GLY247 4.8 18.6 1.0
CB A:THR241 4.8 21.1 1.0
C A:GLY245 4.8 17.9 1.0
O5' P:DT3 4.9 17.4 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN) To Be Published.
Page generated: Fri Dec 17 11:18:29 2021

Last articles

Zn in 8PFC
Zn in 8SF0
Zn in 8SOJ
Zn in 8SOK
Zn in 8SYI
Zn in 8SLG
Zn in 8SEX
Zn in 8SEZ
Zn in 8SJG
Zn in 8SEY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy