Sodium in PDB 6ubg: Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide

Protein crystallography data

The structure of Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide, PDB code: 6ubg was solved by A.U.Singer, J.Teyra, M.Mclaughlin, A.Ernst, F.Sicheri, S.S.Sidhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.03 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.200, 69.200, 49.200, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 18.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide (pdb code 6ubg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide, PDB code: 6ubg:

Sodium binding site 1 out of 1 in 6ubg

Go back to Sodium Binding Sites List in 6ubg
Sodium binding site 1 out of 1 in the Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:34.8
occ:1.00
OD2 A:ASP30 2.6 17.9 1.0
O A:HOH361 3.3 25.4 1.0
CG A:ASP30 3.5 13.8 1.0
CB A:ASP30 3.6 16.9 1.0
O A:HOH324 4.2 22.9 1.0
CG A:PRO65 4.4 17.6 1.0
O A:HOH394 4.6 43.3 1.0
O A:ASP30 4.6 14.5 1.0
OD1 A:ASP30 4.6 15.3 1.0
CD A:PRO65 4.9 18.7 1.0
CA A:PRO65 4.9 14.3 1.0
N A:PRO65 4.9 15.6 1.0
O A:HOH413 4.9 38.9 1.0
CB A:PRO65 5.0 20.2 1.0

Reference:

J.Teyra, M.Mclaughlin, A.Singer, A.Kelil, T.-H.Kim, A.Ernst, F.Sicheri, S.S.Sidhu. Directed Evolution of Pdz Fold Specificity For A Single Peptide Position To Be Published.
Page generated: Tue Dec 15 14:30:58 2020

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