Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
      1s5e
      1s5f
      1s5m
      1s5n
      1s72
      1s81
      1s82
      1s9z
      1sa3
      1saz
      1sb1
      1sca
      1scn
      1sed
      1sfh
      1sfq
      1sg8
      1sgw
      1sih
      1sii
      1sk4
      1so8
      1soo
      1spb
      1ss4
      1su3
      1su4
      1sue
      1sup
      1suz
      1sve
      1svy
      1t2x
      1t3m
      1t3p
      1t4b
      1t64
      1t67
      1t6b
      1t76
      1t8u
      1t9i
      1tae
      1tbz
      1tc8
      1tec
      1tg7
      1thm
      1tjo
      1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 14 (651-700), PDB files 1s5e - 1tjp






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 651-700 (1s5e - 1tjp):
  1. 1s5e - Cholera Holotoxin, Crystal Form 1
  2. 1s5f - Cholera Holotoxin, Crystal Form 2
  3. 1s5m - Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of A Metal-Mediated Hydride Shift
  4. 1s5n - Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of A Metal-Mediated Hydride Shift
  5. 1s72 - Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution
  6. 1s81 - Porcine Trypsin With No Inhibitor Bound
  7. 1s82 - Porcine Trypsin Complexed With Borate and Ethylene Glycol
  8. 1s9z - Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil At Ambient Temperature and Aggregates Into Amyloid-Like Fibrils At Higher Temperatures.
  9. 1sa3 - An Asymmetric Complex of Restriction Endonuclease Mspi on Its Palindromic Dna Recognition Site
  10. 1saz - Membership in the Askha Superfamily: Enzymological Properties and Crystal Structure of Butyrate Kinase 2 From Thermotoga Maritima
  11. 1sb1 - Novel Non-Covalent Thrombin Inhibitors Incorporating P1 4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain Mimetics
  12. 1sca - Enzyme Crystal Structure in A Neat Organic Solvent
  13. 1scn - Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage in the Form of A Carbamate Derivative
  14. 1sed - Crystal Structure Of Protein of Unknown Function Yhal From Bacillus Subtilis
  15. 1sfh - Reduced State of Amicyanin Mutant P94F
  16. 1sfq - Fast Form of Thrombin Mutant R(77A)A Bound to Ppack
  17. 1sg8 - Crystal Structure Of the Procoagulant Fast Form of Thrombin
  18. 1sgw - Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001
  19. 1sih - Agao in Covalent Complex With the Inhibitor Moba ("4-(4- Methylphenoxy)-2-Butyn-1-Amine")
  20. 1sii - Agao in Covalent Complex With the Inhibitor Noba ("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
  21. 1sk4 - Crystal Structure Of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha
  22. 1so8 - Abeta-Bound Human Abad Structure [Also Known As 3-Hydroxyacyl-Coa Dehydrogenase Type II (Type II Hadh), Endoplasmic Reticulum- Associated Amyloid Beta-Peptide Binding Protein (Erab)]
  23. 1soo - Adenylosuccinate Synthetase Inhibited By Hydantocidin 5'-Monophosphate
  24. 1spb - Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal pH 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C
  25. 1ss4 - Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus
  26. 1su3 - X-Ray Structure of Human Prommp-1: New Insights Into Collagenase Action
  27. 1su4 - Crystal Structure of Calcium Atpase With Two Bound Calcium Ions
  28. 1sue - Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
  29. 1sup - Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of Discrete Disorder and Comparison of Crystal Forms
  30. 1suz - The Structure of K92A Ecorv Bound to Cognate Dna and MG2+
  31. 1sve - Crystal Structure of Protein Kinase A in Complex With Azepane Derivative 1
  32. 1svy - Severin Domain 2, 1.75 Angstrom Crystal Structure
  33. 1t2x - Glactose Oxidase C383S Mutant Identified By Directed Evolution
  34. 1t3m - Structure of the Isoaspartyl Peptidase With L-Asparaginase Activity From E. Coli
  35. 1t3p - Half-Sandwich Arene Ruthenium(II)-Enzyme Complex
  36. 1t4b - 1.6 Angstrom Structure of Esherichia Coli Aspartate- Semialdehyde Dehydrogenase.
  37. 1t64 - Crystal Structure of Human HDAC8 Complexed With Trichostatin A
  38. 1t67 - Crystal Structure of Human HDAC8 Complexed With Ms-344
  39. 1t6b - Crystal Structure of B. Anthracis Protective Antigen Complexed With Human Anthrax Toxin Receptor
  40. 1t76 - Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex With A Wxxvw Motif
  41. 1t8u - Crystal Structure of Human 3-O-Sulfotransferase-3 With Bound Pap and Tetrasaccharide Substrate
  42. 1t9i - I-Crei(D20N)/Dna Complex
  43. 1tae - Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal
  44. 1tbz - Human Thrombin With Active Site N-Methyl-D Phenylalanyl-N-[5- (Aminoiminomethyl)Amino]-1-{{Benzothiazolyl)Carbonyl] Butyl]-L- Prolinamide Trifluroacetate and Exosite-Hirugen
  45. 1tc8 - Crystal Structure of Krait-Venom Phospholipase A2 in A Complex With A Natural Fatty Acid Tridecanoic Acid
  46. 1tec - Crystallographic Refinement By Incorporation of Molecular Dynamics. the Thermostable Serine Protease Thermitase Complexed With Eglin-C
  47. 1tg7 - Native Structure of Beta-Galactosidase From Penicillium Sp.
  48. 1thm - Crystal Structure of Thermitase At 1.4 Angstroms Resolution
  49. 1tjo - Iron-Oxo Clusters Biomineralizing on Protein Surfaces. Structural Analysis of H.Salinarum Dpsa in Its Low and High Iron States
  50. 1tjp - Crystal Structure of Wild-Type Tryptophan Synthase Complexed With 1- [(2-Hydroxylphenyl)Amino]3-Glycerolphosphate


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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