Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
      1p0s
      1p0z
      1p2e
      1p2h
      1p4y
      1p4z
      1p54
      1p59
      1p9e
      1pa6
      1ph2
      1ph3
      1ph4
      1ph5
      1ph6
      1ph7
      1ph8
      1ph9
      1pj5
      1pj6
      1pj7
      1ply
      1po8
      1pox
      1pqh
      1px3
      1px4
      1pyf
      1pz0
      1q1q
      1q1z
      1q20
      1q22
      1q3x
      1q6x
      1q7g
      1q7y
      1q81
      1q82
      1q86
      1q8c
      1q93
      1q9i
      1qch
      1qdr
      1qhu
      1qio
      1qj3
      1qjd
      1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 12 (551-600), PDB files 1p0s - 1qjs






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 551-600 (1p0s - 1qjs):
  1. 1p0s - Crystal Structure of Blood Coagulation Factor Xa in Complex With Ecotin M84R
  2. 1p0z - Sensor Kinase Cita Binding Domain
  3. 1p2e - H61A Mutant of Flavocytochrome C3
  4. 1p2h - H61M Mutant of Flavocytochrome C3
  5. 1p4y - Effect Of Sequence on the Conformational Geometry of Dna Holliday Junctions
  6. 1p4z - Effect Of Sequence on the Conformational Geometry of Dna Holliday Junctions
  7. 1p54 - Effect Of Sequence on the Conformational Geometry of Dna Holliday Junctions
  8. 1p59 - Structure of A Non-Covalent Endonuclease III-Dna Complex
  9. 1p9e - Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3
  10. 1pa6 - Crystal Structure of the Oxytricha Nova Telomere End-Binding Protein Complexed With Noncognate Ssdna Ggggttttgagg
  11. 1ph2 - Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed With Noncognate Ssdna Ggggttttg
  12. 1ph3 - Crystal Structure of the Oxytricha Nova Telomere End-Binding Protein Complexed With Noncognate Ssdna Ggggttttggtg
  13. 1ph4 - Crystal Structure of the Oxytricha Nova Telomere End-Binding Protein Complexed With Noncognate Ssdna Ggggttttggcg
  14. 1ph5 - Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed With Noncognate Ssdna Ggggttttg(3DR)Gg
  15. 1ph6 - Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed With Noncognate Ssdna Ggggttttgtgg
  16. 1ph7 - Crystal Structure of the Oxytricha Nova Telomere End-Binding Protein Complexed With Noncognate Ssdna Ggggttttgigg
  17. 1ph8 - Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed With Noncognate Ssdna Ggggttttgcgg
  18. 1ph9 - Crystal Structure of the Oxytricha Nova Telomere End-Binding Protein Complexed With Noncognate Ssdna Ggggttttgagg
  19. 1pj5 - Crystal Structure Of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex With Acetate
  20. 1pj6 - Crystal Structure Of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex With Folic Acid
  21. 1pj7 - Structure Of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex With Folinic Acid
  22. 1ply - Sodium Ions and Water Molecules in the Structure of Poly D(A)(Dot)Poly D(T)
  23. 1po8 - Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid At 2.7 A Resolution.
  24. 1pox - The Refined Structures Of A Stabilized Mutant and of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
  25. 1pqh - Serine 25 to Threonine Mutation of Aspartate Decarboxylase
  26. 1px3 - E. Coli (Lacz) Beta-Galactosidase (G794A)
  27. 1px4 - E. Coli (Lacz) Beta-Galactosidase (G794A) With Iptg Bound
  28. 1pyf - Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo)
  29. 1pz0 - Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Holo)
  30. 1q1q - Crystal Structure Of Human Pregnenolone Sulfotransferase (SULT2B1A) in the Presence of Pap
  31. 1q1z - Crystal Structure Of Human Cholesterol Sulfotransferase (SULT2B1B) in the Presence of Pap
  32. 1q20 - Crystal Structure Of Human Cholesterol Sulfotransferase (SULT2B1B) in the Presence of Pap and Pregnenolone
  33. 1q22 - Crystal Structure Of Human Cholesterol Sulfotransferase (SULT2B1B) in the Presence of Dhea and Pap
  34. 1q3x - Crystal Structure Of the Catalytic Region of Human Masp-2
  35. 1q6x - Crystal Structure of Rat Choline Acetyltransferase
  36. 1q7g - Homoserine Dehydrogenase in Complex With Suicide Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline
  37. 1q7y - Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl Transferase Center of the 50S Ribosomal Subunit
  38. 1q81 - Crystal Structure Of Minihelix With 3' Puromycin Bound to A- Site of the 50S Ribosomal Subunit.
  39. 1q82 - Crystal Structure Of Cc-Puromycin Bound to The A-Site of the 50S Ribosomal Subunit
  40. 1q86 - Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy to Both The A-Site and P- Site of The the 50S Ribosomal Subunit.
  41. 1q8c - A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins
  42. 1q93 - Crystal Structure Of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna
  43. 1q9i - The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina
  44. 1qch - Structure, Dynamics And Hydration of the Nogalamycin- D(Atgcat)2 Complex Determined By uc(Nmr) and Molecular Dynamics Simulations in Solution
  45. 1qdr - 2.1 A Resolution Structure of Escherichia Coli Lytic Transglycosylase SLT35
  46. 1qhu - Mammalian Blood Serum Haemopexin Deglycosylated and in Complex With Its Ligand Haem
  47. 1qio - Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme
  48. 1qj3 - Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in Complex With 7-Keto-8-Aminopelargonic Acid
  49. 1qjd - Flavocytochrome C3 From Shewanella Frigidimarina
  50. 1qjs - Mammalian Blood Serum Haemopexin Glycosylated-Native Protein and in Complex With Its Ligand Haem


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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