Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
      1nta
      1ntb
      1nvj
      1nxd
      1nza
      1nzw
      1nzx
      1nzz
      1o00
      1o01
      1o02
      1o04
      1o05
      1o0k
      1o1z
      1o2g
      1o4y
      1o4z
      1o5g
      1o68
      1o8u
      1o9i
      1oa8
      1oaf
      1oan
      1oar
      1ob0
      1ob7
      1oco
      1ocr
      1ocz
      1od8
      1odz
      1oih
      1oij
      1omo
      1onw
      1orn
      1orp
      1oua
      1oub
      1ouc
      1oud
      1oue
      1ouf
      1oug
      1ouh
      1oui
      1ouj
      1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 11 (501-550), PDB files 1nta - 1oyt






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 501-550 (1nta - 1oyt):
  1. 1nta - 2.9 A Crystal Structure of Streptomycin Rna-Aptamer
  2. 1ntb - 2.9 A Crystal Structure of Streptomycin Rna-Aptamer Complex
  3. 1nvj - Deletion Mutant (Delta 141) of Molybdopterin Synthase
  4. 1nxd - Crystal Structure of Mnmn Concanavalin A
  5. 1nza - Divalent Cation Tolerance Protein (Cut A1) From Thermus Thermophilus HB8
  6. 1nzw - CYS302SER Mutant of Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nadh and MG2+
  7. 1nzx - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nad+ in the Presence of Low MG2+
  8. 1nzz - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nadh in the Presence of Low MG2+
  9. 1o00 - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nad+ and MG2+ Showing Dual Nad(H) Conformations
  10. 1o01 - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Crotonaldehyde, Nad(H) and MG2+
  11. 1o02 - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nadh in the Presence of MG2+
  12. 1o04 - CYS302SER Mutant of Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nad+ and MG2+
  13. 1o05 - Apo Form of Human Mitochondrial Aldehyde Dehydrogenase
  14. 1o0k - Structure of the First Parallel Dna Quadruplex-Drug Complex
  15. 1o1z - Crystal Structure of Glycerophosphodiester Phosphodiesterase (Gdpd) (TM1621) From Thermotoga Maritima At 1.60 A Resolution
  16. 1o2g - Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors
  17. 1o4y - The Three-Dimensional Structure of Beta-Agarase A From Zobellia Galactanivorans
  18. 1o4z - The Three-Dimensional Structure of Beta-Agarase B From Zobellia Galactanivorans
  19. 1o5g - Dissecting and Designing Inhibitor Selectivity Determinants At the S1 Site Using An Artificial ALA190 Protease (ALA190 Upa)
  20. 1o68 - Crystal Structure of 3-Methyl-2-Oxobutanoate Hydroxymethyltransferase
  21. 1o8u - The 2 Angstrom Structure of 6-Oxo Camphor Hydrolase: New Structural Diversity in the Crotonase Superfamily
  22. 1o9i - Crystal Structure Of the Y42F Mutant of Manganese Catalase From Lactobacillus Plantarum At 1.33A Resolution
  23. 1oa8 - Axh Domain of Human Spinocerebellar Ataxin-1
  24. 1oaf - Ascobate Peroxidase From Soybean Cytosol in Complex With Ascorbate
  25. 1oan - Crystal Structure of the Dengue 2 Virus Envelope Protein
  26. 1oar - Fv Ige Spe-7 in Complex With Alizarin Red
  27. 1ob0 - Kinetic Stabilization Of Bacillus Licheniformis-Amylase Through Introduction of Hydrophobic Residues At the Surface
  28. 1ob7 - Cephaibol C
  29. 1oco - Bovine Heart Cytochrome C Oxidase in Carbon Monoxide-Bound State
  30. 1ocr - Bovine Heart Cytochrome C Oxidase in the Fully Reduced State
  31. 1ocz - Bovine Heart Cytochrome C Oxidase in Azide-Bound State
  32. 1od8 - Xylanase XYN10A From Streptomyces Lividans in Complex With Xylobio-Isofagomine Lactam
  33. 1odz - Expansion of the Glycosynthase Repertoire to Produce Defined Manno-Oligosaccharides
  34. 1oih - Crystal Structure of the Alkylsulfatase Atsk, A Non-Heme Fe(II) Alphaketoglutarate Dependent Dioxygenase
  35. 1oij - Crystal Structure of the Alkylsulfatase Atsk, A Non-Heme Fe (II) Alphaketoglutarate Dependent Dioxygenase in Complex With Alphaketoglutarate
  36. 1omo - Alanine Dehydrogenase Dimer W/Bound Nad (Archaeal)
  37. 1onw - Crystal Structure of Isoaspartyl Dipeptidase From E. Coli
  38. 1orn - Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Guanine Complex
  39. 1orp - Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex
  40. 1oua - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the I56T Mutant
  41. 1oub - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V100A Mutant
  42. 1ouc - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V110A Mutant
  43. 1oud - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V121A Mutant
  44. 1oue - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V125A Mutant
  45. 1ouf - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V130A Mutant
  46. 1oug - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V2A Mutant
  47. 1ouh - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V74A Mutant
  48. 1oui - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V93A Mutant
  49. 1ouj - Contribution Of Hydrophobic Residues to The Stability Of Human Lysozyme: X-Ray Structure of the V99A Mutant
  50. 1oyt - Complex of Recombinant Human Thrombin With A Designed Fluorinated Inhibitor


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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