Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
      1kvt
      1kvu
      1ky8
      1l0i
      1l0r
      1l0z
      1l1g
      1l2t
      1l2x
      1l3z
      1l4j
      1l5b
      1l7k
      1l8s
      1l9b
      1lcc
      1lcd
      1lds
      1lj1
      1lk5
      1lk7
      1lkb
      1lla
      1lok
      1lpi
      1lra
      1lrj
      1lrk
      1lrl
      1ltm
      1lz8
      1lz9
      1lzn
      1lzs
      1m0n
      1m0o
      1m0p
      1m0q
      1m1k
      1m2x
      1m4y
      1m5q
      1m64
      1m65
      1m90
      1m9m
      1mau
      1mdg
      1me7
      1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 9 (401-450), PDB files 1kvt - 1me8






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 401-450 (1kvt - 1me8):
  1. 1kvt - Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
  2. 1kvu - Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
  3. 1ky8 - Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase
  4. 1l0i - Crystal Structure of Butyryl-Acp I62M Mutant
  5. 1l0r - uc(Nmr) Solution Structure of Nogalamycin Intercalation Between Co-Axially Stacked Hairpins
  6. 1l0z - The Structure of Porcine Pancreatic Elastase Complexed With Xenon and Bromide, Cryoprotected With Dry Paraffin Oil
  7. 1l1g - The Structure of Porcine Pancreatic Elastase Complexed With Xenon and Bromide, Cryoprotected With Glycerol
  8. 1l2t - Dimeric Structure of MJ0796, A Bacterial Abc Transporter Cassette
  9. 1l2x - Atomic Resolution Crystal Structure of A Viral Rna Pseudoknot
  10. 1l3z - Crystal Structure Analysis of An Rna Heptamer
  11. 1l4j - Holliday Junction Tcggtaccga With Na and Ca Binding Sites.
  12. 1l5b - Domain-Swapped Cyanovirin-N Dimer
  13. 1l7k - X-Ray Structure of Galactose Mutarotase From Lactococcus Lactis Complexed With Galactose
  14. 1l8s - Carboxylic Ester Hydrolase Complex (Dimeric PLA2 + Lpc- Ether + Acetate + Phosphate Ions)
  15. 1l9b - X-Ray Structure of the Cytochrome-C(2)-Photosynthetic Reaction Center Electron Transfer Complex From Rhodobacter Sphaeroides in Type II Co- Crystals
  16. 1lcc - Structure Of the Complex of Lac Repressor Headpiece And An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics
  17. 1lcd - Structure Of the Complex of Lac Repressor Headpiece And An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics
  18. 1lds - Crystal Structure of Monomeric Human Beta-2-Microglobulin
  19. 1lj1 - Crystal Structure of Q363F/R402A Mutant Flavocytochrome C3
  20. 1lk5 - Structure of the D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii
  21. 1lk7 - Structure of D-Ribose-5-Phosphate Isomerase From in Complex With Phospho-Erythronic Acid
  22. 1lkb - Porcine Pancreatic Elastase/Na-Complex
  23. 1lla - Crystal Structure of Deoxygenated Limulus Polyphemus Subunit II Hemocyanin At 2.18 Angstroms Resolution: Clues For A Mechanism For Allosteric Regulation
  24. 1lok - The 1.20 Angstrom Resolution Crystal Structure Of the Aminopeptidase From Aeromonas Proteolytica Complexed With Tris: A Tale of Buffer Inhibition
  25. 1lpi - Hew Lysozyme: Trp...Na Cation-Pi Interaction
  26. 1lra - Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate At 1.9 Angstroms Resolution
  27. 1lrj - Crystal Structure of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine
  28. 1lrk - Crystal Structure of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299C Complexed With Udp-N-Acetylglucosamine
  29. 1lrl - Crystal Structure of Udp-Galactose 4-Epimerase Mutant Y299C Complexed With Udp-Glucose
  30. 1ltm - Accelerated X-Ray Structure Elucidation of A 36 Kda Muramidase/Transglycosylase Using Warp
  31. 1lz8 - Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines
  32. 1lz9 - Anomalous Signal Of Solvent Bromines Used For Phasing of Lysozyme
  33. 1lzn - Neutron Structure of Hen Egg-White Lysozyme
  34. 1lzs - Structural Changes of the Active Site Cleft and Different Saccharide Binding Modes in Human Lysozyme Co-Crystallized With Hexa-N-Acetyl- Chitohexaose At pH 4.0
  35. 1m0n - Structure of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate
  36. 1m0o - Structure of Dialkylglycine Decarboxylase Complexed With 1- Amino-1-Methylpropanephosphonate
  37. 1m0p - Structure of Dialkylglycine Decarboxylase Complexed With 1- Amino-1-Phenylethanephosphonate
  38. 1m0q - Structure of Dialkylglycine Decarboxylase Complexed With S- 1-Aminoethanephosphonate
  39. 1m1k - Co-Crystal Structure Of Azithromycin Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui
  40. 1m2x - Crystal Structure Of The Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex With the Inhibitor D- Captopril
  41. 1m4y - Crystal Structure of Hslv From Thermotoga Maritima
  42. 1m5q - Crystal Structure of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum
  43. 1m64 - Crystal Structure of Q363F Mutant Flavocytochrome C3
  44. 1m65 - Ycdx Protein
  45. 1m90 - Co-Crystal Structure of Cca-Phe-Caproic Acid-Biotin and Sparsomycin Bound to the 50S Ribosomal Subunit
  46. 1m9m - Human Endothelial Nitric Oxide Synthase With 6- Nitroindazole Bound
  47. 1mau - Crystal Structure of Tryptophanyl-Trna Synthetase Complexed With Atp and Tryptophanamide in A Pre-Transition State Conformation
  48. 1mdg - An Alternating Antiparallel Octaplex in An Rna Crystal Structure
  49. 1me7 - Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp and Moa Bound
  50. 1me8 - Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp Bound


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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