Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
      4gdt
      4gdu
      4gdv
      4gdw
      4gib
      4mat
      4mt2
      4znb
      7gep
      7ice
      7icf
      7icg
      7ich
      7ici
      7icj
      7ick
      7icl
      7icm
      7icn
      7ico
      7icp
      7icq
      7icr
      7ics
      7ict
      7icu
      7icv
      7kme
      8ica
      8icb
      8icc
      8ice
      8icf
      8icg
      8ich
      8ici
      8icj
      8ick
      8icl
      8icm
      8icn
      8ico
      8icp
      8icq
      8icr
      8ics
      8ict
      8icu
      8icv
      8icw
    PDB 8icx-9icy

Sodium in PDB, part 64 (3151-3200), PDB files 4gdt - 8icw






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 3151-3200 (4gdt - 8icw):
  1. 4gdt - Crystal Structure of Malonate-Bound Human L-Asparaginase Protein
  2. 4gdu - Crystal Structure of Sulfate-Bound Human L-Asparaginase Protein
  3. 4gdv - Crystal Structure of Partially-Cleaved Human L-Asparaginase Protein in Complex With L-Aspartate
  4. 4gdw - Crystal Structure of Fully-Cleaved Human L-Asparaginase Protein in Complex With L-Aspartate
  5. 4gib - 2.27 Angstrom Crystal Structure of Beta-Phosphoglucomutase (Pgmb) From Clostridium Difficile
  6. 4mat - E.Coli Methionine Aminopeptidase HIS79ALA Mutant
  7. 4mt2 - Comparison Of The uc(Nmr) Solution Structure and the X-Ray Crystal Structure of Rat Metallothionein-2
  8. 4znb - Metallo-Beta-Lactamase (C181S Mutant)
  9. 7gep - Sulfite Reductase Hemoprotein in Complex With A Partially Oxidized Sulfide Species
  10. 7ice - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
  11. 7icf - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
  12. 7icg - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
  13. 7ich - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
  14. 7ici - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
  15. 7icj - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
  16. 7ick - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
  17. 7icl - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
  18. 7icm - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
  19. 7icn - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
  20. 7ico - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  21. 7icp - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
  22. 7icq - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  23. 7icr - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  24. 7ics - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  25. 7ict - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
  26. 7icu - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
  27. 7icv - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Dna; Soaked In The Presence Of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
  28. 7kme - Crystal Structure of Human Alpha-Thrombin Inhibited With SEL2711.
  29. 8ica - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and CACL2 (5 Millimolar)
  30. 8icb - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Artificial Mother Liquor
  31. 8icc - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs of Dna (No 5'-Phosphate)
  32. 8ice - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and CDCL2 (1 Millimolar)
  33. 8icf - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (10 Millimolar) and MGCL2 (50 Millimolar)
  34. 8icg - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and MGCL2 (5 Millimolar)
  35. 8ich - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MGCL2 (5 Millimolar)
  36. 8ici - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MGCL2 (5 Millimolar)
  37. 8icj - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MGCL2
  38. 8ick - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar), MGCL2 (5 Millimolar), and MNCL2 (5 Millimolar)
  39. 8icl - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and NICL2 (5 Millimolar)
  40. 8icm - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Ammonium Sulfate (75 Millimolar)
  41. 8icn - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Atp (1 Millimolar) and MNCL2 (5 Millimolar)
  42. 8ico - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Azt-Tp (1 Millimolar) and MNCL2 (5 Millimolar)
  43. 8icp - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
  44. 8icq - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence Of of Datp (0.1 Millimolar) and MNCL2 (0.5 Millimolar)
  45. 8icr - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
  46. 8ics - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
  47. 8ict - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
  48. 8icu - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Ddatp (1 Millimolar) and MNCL2 (5 Millimolar)
  49. 8icv - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MNCL2 (5 Millimolar)
  50. 8icw - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
© Copyright 2008-2012 by atomistry.com