Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
      4ecn
      4eco
      4ecz
      4ed0
      4ed1
      4ed2
      4ed3
      4eek
      4eel
      4efd
      4ehu
      4eiy
      4en4
      4eni
      4eoh
      4epi
      4eqi
      4er6
      4esk
      4et8
      4et9
      4etc
      4etk
      4euz
      4exq
      4exr
      4eze
      4f06
      4f3y
      4f4r
      4f7a
      4fao
      4fet
      4fev
      4few
      4fex
      4ff7
      4fj4
      4fmt
      4fo6
      4fud
      4fui
      4fx5
      4fxl
      4fxz
      4fy0
      4g0a
      4g1k
      4g6z
      4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 63 (3101-3150), PDB files 4ecn - 4g8t






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 3101-3150 (4ecn - 4g8t):
  1. 4ecn - Crystal Structure of A Leucine-Rich Repeat Protein (BT_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution
  2. 4eco - Crystal Structure of A Hypothetical Protein (BACEGG_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution
  3. 4ecz - Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal At pH 6.5 (Na+ Mes) With 1 CA2+ Ion
  4. 4ed0 - Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal At pH 6.8 (Na+ Mes) With 1 CA2+ Ion
  5. 4ed1 - Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal At pH 7.0 (Na+ Mes) With 1 CA2+ Ion
  6. 4ed2 - Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal At pH 7.2 (Na+ Hepes) With 1 CA2+ Ion
  7. 4ed3 - Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal At pH 7.5 (Na+ Hepes) With 1 CA2+ Ion
  8. 4eek - Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) With Bound Phosphate and Sodium
  9. 4eel - Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) With Bound Citrate and Sodium
  10. 4efd - Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440
  11. 4ehu - Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile With Bound Adpnp
  12. 4eiy - Crystal Structure Of the Chimeric Protein of A2AAR-Bril in Complex With ZM241385 At 1.8A Resolution
  13. 4en4 - Crystal Structure of the Ternary Human Pl Kinase-Ginkgotoxin-Mgatp Complex
  14. 4eni - Influence of Europium Metal in Experimental Phasing
  15. 4eoh - Crystal Structure of Human Pl Kinase With Bound Theophylline
  16. 4epi - The Crystal Structure of Pesticin-T4 Lysozyme Hybrid Stabilized By Engineered Disulfide Bonds
  17. 4eqi - Crystal Structure of Serratia Fonticola Carbapenemase Sfc-1
  18. 4er6 - Crystal Structure of Human DOT1L in Complex With Inhibitor SGC0946
  19. 4esk - Crystal Structure Of A Strand-Swapped Dimer of Mouse Leukocyte- Associated Immunoglobulin-Like Receptor 1 (Nysgrc-006047)Ig-Like Domain
  20. 4et8 - Hen Egg-White Lysozyme Solved From 40 Fs Free-Electron Laser Pulse Data
  21. 4et9 - Hen Egg-White Lysozyme Solved From 5 Fs Free-Electron Laser Pulse Data
  22. 4etc - Lysozyme, Room Temperature, 24 Kgy Dose
  23. 4etk - Crystal Structure Of E6A/L130D/A155H Variant of De Novo Designed Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target OR186
  24. 4euz - Crystal Structure of Serratia Fonticola Carbapenemase Sfc-1 S70A- Meropenem Complex
  25. 4exq - Crystal Structure of Uroporphyrinogen Decarboxylase (Upd) From Burkholderia Thailandensis E264
  26. 4exr - Crystal Structure of A Putative Lipoprotein (CD1622) From Clostridium Difficile 630 At 1.85 A Resolution
  27. 4eze - Crystal Structure of Had Family Hydrolase T0658 From Salmonella Enterica Subsp. Enterica Serovar Typhi (Target Efi-501419)
  28. 4f06 - Crystal Structure Of Solute Binding Protein of Abc Transporter From Rhodopseudomonas Palustris HAA2 RPB_2270 in Complex With P- Hydroxybenzoic Acid
  29. 4f3y - X-Ray Crystal Structure of Dihydrodipicolinate Reductase From Burkholderia Thailandensis
  30. 4f4r - Crystal Structure of D-Mannonate Dehydratase Homolog From Chromohalobacter Salexigens (Target Efi-502114), With Bound Na, Ordered Loop
  31. 4f7a - Crystal Structure of A Susd Homolog (BVU_2203) From Bacteroides Vulgatus Atcc 8482 At 1.85 A Resolution
  32. 4fao - Specificity and Structure of A High Affinity Activin-Like 1 (ALK1) Signaling Complex
  33. 4fet - Catalytic Domain of Germination-Specific Lytic Tansglycosylase Sleb From Bacillus Anthracis
  34. 4fev - Crystal Structure of the Aminoglycoside Phosphotransferase Aph(3')-Ia, With Substrate Kanamycin and Small Molecule Inhibitor Pyrazolopyrimidine PP1
  35. 4few - Crystal Structure of the Aminoglycoside Phosphotransferase Aph(3')-Ia, With Substrate Kanamycin and Small Molecule Inhibitor Pyrazolopyrimidine PP2
  36. 4fex - Crystal Structure of the Aminoglycoside Phosphotransferase Aph(3')-Ia, With Substrate Kanamycin and Small Molecule Inhibitor Tyrphostin AG1478
  37. 4ff7 - Structure Of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase
  38. 4fj4 - Crystal Structure of The Protein Q9HRE7 Complexed With Mercury From Halobacterium Salinarium At the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50
  39. 4fmt - Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 At 2.30 A Resolution
  40. 4fo6 - Crystal Structure Of The Pre-Catalytic Ternary Complex of Polymerase Lambda With A Datp Analog Opposite A Templating T and An Rcmp At the Primer Terminus.
  41. 4fud - Crystal Structure of the Urokinase
  42. 4fui - Crystal Structure of the Urokinase
  43. 4fx5 - Von Willebrand Factor Type A From Catenulispora Acidiphila
  44. 4fxl - Crystal Structure of the D76N Beta-2 Microglobulin Mutant
  45. 4fxz - Crystal Structure of Leut-F253A Bound to L-Leucine From Lipid Bicelles
  46. 4fy0 - Crystal Structure of Leut-F253A Bound to L-Selenomethionine From Lipid Bicelles
  47. 4g0a - Crystallographic Analysis Of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity
  48. 4g1k - Crystal Structure of Triosephosphate Isomerase From Burkholderia Thailandensis
  49. 4g6z - Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Burkholderia Thailandensis Bound to L-Glutamate
  50. 4g8t - Crystal Structure of A Glucarate Dehydratase Related Protein, From Actinobacillus Succinogenes, Target Efi-502312, With Sodium and Sulfate Bound, Ordered Loop


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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