Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
      4aga
      4ain
      4alo
      4amj
      4aob
      4atf
      4ax9
      4ayv
      4ayy
      4d99
      4d9t
      4d9u
      4dd8
      4ddo
      4df2
      4dfg
      4dgv
      4dih
      4dii
      4dka
      4dn0
      4do9
      4doa
      4dob
      4doc
      4dou
      4dpp
      4dpq
      4drr
      4drt
      4dt7
      4dw8
      4dxk
      4dxz
      4dy7
      4e0s
      4e0t
      4e0u
      4e11
      4e14
      4e1j
      4e6k
      4e6p
      4e71
      4e77
      4e7r
      4e96
      4eaa
      4eab
      4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 62 (3051-3100), PDB files 4aga - 4eae






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 3051-3100 (4aga - 4eae):
  1. 4aga - Hofmeister Effects of Ionic Liquids in Protein Crystallization: Direct and Water-Mediated Interactions
  2. 4ain - Crystal Structure of Betp With Asymmetric Protomers.
  3. 4alo - Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus
  4. 4amj - Turkey BETA1 Adrenergic Receptor With Stabilising Mutations and Bound Biased Agonist Carvedilol
  5. 4aob - Sam-I Riboswitch Containing the T. Solenopsae Kt-23 in Complex With S-Adenosyl Methionine
  6. 4atf - Crustal Structure of Inactivated Mutant Beta-Agarase B in Complex With Agaro-Octaose
  7. 4ax9 - Human Thrombin Complexed With Napsagatran, RO0466240
  8. 4ayv - Human Thrombin - Inhibitor Complex
  9. 4ayy - Human Thrombin - Inhibitor Complex
  10. 4d99 - Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser Bound Non- Covalently At the Active Site
  11. 4d9t - RSK2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl 3-(4-Amino-7- (3-Hydroxypropyl)-5-P-Tolyl-7H-Pyrrolo[2,3-D]Pyrimidin-6-Yl)-2- Cyanoacrylate
  12. 4d9u - RSK2 C-Terminal Kinase Domain, (E)-Tert-Butyl 3-(4-Amino-7-(3- Hydroxypropyl)-5-P-Tolyl-7H-Pyrrolo[2,3-D]Pyrimidin-6-Yl)-2- Cyanoacrylate
  13. 4dd8 - Adam-8 Metalloproteinase Domain With Bound Batimastat
  14. 4ddo - Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase II From Burkholderia Vietnamiensis
  15. 4df2 - P. Stipitis OYE2.6 Complexed With P-Chlorophenol
  16. 4dfg - Crystal Structure of Wild-Type Hiv-1 Protease With Cyclopentyltetrahydro- Furanyl Urethanes As P2-Ligand, Grl-0249A
  17. 4dgv - Structure of The Hepatitis C Virus Envelope Glycoprotein E2 Antigenic Region 412-423 Bound to the Broadly Neutralizing Antibody HCV1, P2(1) Form
  18. 4dih - X-Ray Structure Of The Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
  19. 4dii - X-Ray Structure Of The Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Potassium Ions
  20. 4dka - Structure of Editosome Protein
  21. 4dn0 - Peld 156-455 From Pseudomonas Aeruginosa PA14 in Complex With C-Di-Gmp
  22. 4do9 - Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Stereoselective Binding of R-Isomer
  23. 4doa - Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Non-Interactive Binding of S-Isomer
  24. 4dob - Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate: Stereoselective Binding of R-Isomer
  25. 4doc - Ternary Complex Of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate:Binding of S-Isomer
  26. 4dou - Crystal Structure Of A Single-Chain Trimer of Human Adiponectin Globular Domain
  27. 4dpp - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana
  28. 4dpq - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana in Complex With (S)-Lysine
  29. 4drr - Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts With A-Type Histo-Blood Group Antigen
  30. 4drt - Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89
  31. 4dt7 - Crystal Structure Of Thrombin Bound to the Activation Domain Qedqvdprlidgkmtrrgds of Protein C
  32. 4dw8 - Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron With Bound Na Crystal Form I
  33. 4dxk - Crystal Structure of An Enolase (Mandelate Racemase Subgroup, Target Efi-502086) From Agrobacterium Tumefaciens, With A Succinimide Residue, Na and Phosphate
  34. 4dxz - Crystal Structure Of A Plig-Ec Mutant, A Periplasmic Lysozyme Inhibitor of G-Type Lysozyme From Escherichia Coli
  35. 4dy7 - Crystal Structures of Protease Nexin-1 in Complex With S195A Thrombin
  36. 4e0s - Crystal Structure of C5B-6
  37. 4e0t - Crystal Structure of Cdpnpt in Its Unbound State
  38. 4e0u - Crystal Structure of Cdpnpt in Complex With Thiolodiphosphate and (S)- Benzodiazependione
  39. 4e11 - Crystal Structure of Kynurenine Formamidase From Drosophila Melanogaster
  40. 4e14 - Crystal Structure of Kynurenine Formamidase Conjugated With Phenylmethylsulfonyl Fluoride
  41. 4e1j - Crystal Structure of Glycerol Kinase in Complex With Glycerol From Sinorhizobium Meliloti 1021
  42. 4e6k - 2.0 A Resolution Structure of Pseudomonas Aeruginosa Bacterioferritin (Bfrb) in Complex With Bacterioferritin Associated Ferredoxin (Bfd)
  43. 4e6p - Crystal Structure of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021
  44. 4e71 - Crystal Structure Of the Rho Gtpase Binding Domain of Plexin B2
  45. 4e77 - 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92
  46. 4e7r - Thrombin in Complex With 3-Amidinophenylalanine Inhibitor
  47. 4e96 - Crystal Structure Of The First Bromodomain of Human BRD4 in Complex With the Inhibitor Pfi-1
  48. 4eaa - X-Ray Crystal Structure Of the H141N Mutant of Perosamine N- Acetyltransferase From Caulobacter Crescentus in Complex With Coa and Gdp-Perosamine
  49. 4eab - X-Ray Crystal Structure Of the H141A Mutant of Gdp-Perosamine N-Acetyl Transferase From Caulobacter Crescentus in Complex With Coa and Gdp- Perosamine
  50. 4eae - The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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