Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
      3v72
      3vbf
      3vbh
      3vbo
      3vd3
      3vd4
      3vd5
      3vd7
      3vd9
      3vda
      3vdb
      3vdc
      3vh9
      3vi2
      3vif
      3vig
      3vih
      3vii
      3vij
      3vik
      3vil
      3vim
      3vin
      3vio
      3vip
      3vou
      3vsb
      3znb
      3zso
      420d
      434d
      435d
      437d
      464d
      466d
      4a1n
      4a3r
      4a41
      4a44
      4a45
      4a81
      4a87
      4aab
      4aax
      4acl
      4adn
      4ae4
      4aeb
      4af8
      4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 61 (3001-3050), PDB files 3v72 - 4ag2






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 3001-3050 (3v72 - 4ag2):
  1. 3v72 - Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna
  2. 3vbf - Crystal Structure of Formaldehyde Treated Human Enterovirus 71 (Space Group I23)
  3. 3vbh - Crystal Structure of Formaldehyde Treated Human Enterovirus 71 (Space Group R32)
  4. 3vbo - Crystal Structure of Formaldehyde Treated Empty Human Enterovirus 71 Particle (Cryo At 100K)
  5. 3vd3 - E. Coli (Lacz) Beta-Galactosidase (N460D)
  6. 3vd4 - E. Coli (Lacz) Beta-Galactosidase (N460D) in Complex With Iptg
  7. 3vd5 - E. Coli (Lacz) Beta-Galactosidase (N460S)
  8. 3vd7 - E. Coli (Lacz) Beta-Galactosidase (N460S) in Complex With Galactotetrazole
  9. 3vd9 - E. Coli (Lacz) Beta-Galactosidase (N460S) in Complex With Iptg
  10. 3vda - E. Coli (Lacz) Beta-Galactosidase (N460T)
  11. 3vdb - E. Coli (Lacz) Beta-Galactosidase (N460T) in Complex With Galactonolactone
  12. 3vdc - E. Coli (Lacz) Beta-Galactosidase (N460T) in Complex With Iptg
  13. 3vh9 - Crystal Structure of Aeromonas Proteolytica Aminopeptidase Complexed With 8-Quinolinol
  14. 3vi2 - Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex With Inhibitor Hmoa
  15. 3vif - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Gluconolactone
  16. 3vig - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With 1-Deoxynojirimycin
  17. 3vih - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Glycerol
  18. 3vii - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Bis-Tris
  19. 3vij - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Glucose
  20. 3vik - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Cellobiose
  21. 3vil - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With Salicin
  22. 3vim - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With A New Glucopyranosidic Product
  23. 3vin - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With A New Glucopyranosidic Product
  24. 3vio - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With A New Glucopyranosidic Product
  25. 3vip - Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex With A New Glucopyranosidic Product
  26. 3vou - The Crystal Structure of Nak-Navsulp Chimera Channel
  27. 3vsb - Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid Inhibitor Complex
  28. 3znb - Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
  29. 3zso - Small Molecule Inhibitors Of the Ledgf Site of Hiv Type 1 Integrase Identified By Fragment Screening and Structure Based Design
  30. 420d - Crystal Structure of A 16-Mer Rna Duplex With Non-Adjacent A(Anti).G(Syn) Mismatches
  31. 434d - 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3'
  32. 435d - 5'-R(*Up*Ap*Gp*Cp*Cp*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3'
  33. 437d - Crystal Structure of An Rna Pseudoknot From Beet Western Yellow Virus Involved in Ribosomal Frameshifting
  34. 464d - Disorder and Twin Refinement of Rna Heptamer Double Helix
  35. 466d - Disorder and Twin Refinement of Rna Heptamer Double Helix
  36. 4a1n - Human Mitochondrial Endo-Exonuclease
  37. 4a3r - Crystal Structure of Enolase From Bacillus Subtilis.
  38. 4a41 - CPGH89CBM32-5, From Clostridium Perfringens, in Complex With Galactose
  39. 4a44 - CPGH89CBM32-5, From Clostridium Perfringens, in Complex With the Tn Antigen
  40. 4a45 - CPGH89CBM32-5, From Clostridium Perfringens, in Complex With Galnac-Beta-1,3-Galactose
  41. 4a81 - Crystal Structure of Major Birch Pollen Allergen Bet V 1 A in Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate ( Ans) and Deoxycholic Acid
  42. 4a87 - Crystal Structure of Major Birch Pollen Allergen Bet V 1 A in Complex With Naringenin.
  43. 4aab - Crystal Structure of The Mutant D75N I-Crei in Complex With Its Wild-Type Target (the Four Central Bases, 2NN Region, Are Composed By Gtac From 5' to 3')
  44. 4aax - CPGH89CBM32-5, From Clostridium Perfringens, in Complex With N-Acetylgalactosamine
  45. 4acl - 3D Structure of Dotu From Francisella Novicida
  46. 4adn - Fusidic Acid Resistance Protein Fusb
  47. 4ae4 - The UBAP1 Subunit of Escrt-I Interacts With Ubiquitin Via A Novel Souba Domain
  48. 4aeb - Sam-I Riboswitch Containing the Kt-23 Kink Turn of T. Solenopsae in Complex With S-Adenosylmethionine
  49. 4af8 - The Structural Basis For Metacaspase Substrate Specificity and Activation
  50. 4ag2 - Human Chymase - Fynomer Complex


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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