Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
      3tfs
      3th2
      3th4
      3tif
      3tij
      3tjl
      3tkw
      3tl9
      3tmu
      3tmv
      3tmw
      3tmx
      3tok
      3tp2
      3tvb
      3twf
      3typ
      3u18
      3u4m
      3u69
      3u8o
      3u8r
      3u8t
      3ua6
      3ua7
      3ucy
      3ues
      3uet
      3ug3
      3unx
      3upq
      3upw
      3uq0
      3uq1
      3uq2
      3uq4
      3uq5
      3ur7
      3uu5
      3uu6
      3uu8
      3uub
      3uvf
      3uwp
      3uy7
      3uz5
      3v31
      3v4m
      3v6k
      3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 60 (2951-3000), PDB files 3tfs - 3v6o






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2951-3000 (3tfs - 3v6o):
  1. 3tfs - Ternary Complex Structure Of Dna Polymerase Beta With A Gapped Dna Substrate and A, B Damp(Cfh)Pp in the Active Site: Stereoselective Binding of (S) Isomer
  2. 3th2 - MG2+ Is Required For Optimal Folding Of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors At Physiological CA2+
  3. 3th4 - MG2+ Is Required For Optimal Folding Of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors At Physiological CA2+
  4. 3tif - Dimeric Structure Of A Post-Hydrolysis State of the Atp-Binding Cassette MJ0796 Bound to Adp and Pi
  5. 3tij - Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae
  6. 3tjl - Crystal Structure of A Novel Oye From the Xylose-Fermenting Fungus P. Stipitis
  7. 3tkw - Crystal Structure of Hiv Protease Model Precursor/Darunavir Complex
  8. 3tl9 - Crystal Structure of Hiv Protease Model Precursor/Saquinavir Complex
  9. 3tmu - X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)
  10. 3tmv - X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Dose=0.12MGY)
  11. 3tmw - X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)
  12. 3tmx - X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Dose=1.9MGY)
  13. 3tok - Assaying the Energies of Biological Halogen Bonds.
  14. 3tp2 - Crystal Structure of the Splicing Factor CWC2 From Yeast
  15. 3tvb - A Highly Symmetric Dna G-4 Quadruplex/Drug Complex
  16. 3twf - Crystal Structure of the De Novo Designed Fluorinated Peptide ALPHA4F3A
  17. 3typ - The Crystal Structure of the Inorganic Triphosphatase NE1496
  18. 3u18 - Chicago Sky Blue 6B, A Novel Inhibitor For Macrophage Migration Inhibitory Factor
  19. 3u4m - Crystal Structure of Ribosomal Protein TTHL1 in Complex With 80NT 23S Rna From Thermus Thermophilus
  20. 3u69 - Unliganded Wild-Type Human Thrombin
  21. 3u8o - Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
  22. 3u8r - Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
  23. 3u8t - Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
  24. 3ua6 - Crystal Structure of the Human Fyn SH3 Domain
  25. 3ua7 - Crystal Structure of The Human Fyn SH3 Domain in Complex With A Peptide From the Hepatitis C Virus NS5A-Protein
  26. 3ucy - Structure Of MG2+ Bound N-Terminal Domain Of Calmodulin in the Presence of ZN2+
  27. 3ues - Crystal Structure of Alpha-1,3/4-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin
  28. 3uet - Crystal Structure of Alpha-1,3/4-Fucosidase From Bifidobacterium Longum Subsp. Infantis D172A/E217A Mutant Complexed With Lacto-N- Fucopentaose II
  29. 3ug3 - Crystal Structure of Alpha-L-Arabinofuranosidase From Thermotoga Maritima Ligand Free Form
  30. 3unx - Bond Length Analysis of Asp, Glu and His Residues in Subtilisin Carlsberg At 1.26A Resolution
  31. 3upq - Crystal Structure Of the Pre-Catalytic Ternary Complex of Polymerase Lambda With An Ratp Analog Opposite A Templating T.
  32. 3upw - Pichia Stipitis OYE2.6 Complexed With Nicotinamide
  33. 3uq0 - Crystal Structure Of The Post-Catalytic Product Complex of Polymerase Lambda With An Ramp At the Primer Terminus.
  34. 3uq1 - Crystal Structure Of The Pre-Catalytic Ternary Complex of Polymerase Lambda With A Datp Analog Opposite A Templating T and A Rcmp At the Primer Terminus.
  35. 3uq2 - Crystal Structure Of The Post-Catalytic Product Complex of Polymerase Lambda With An Ramp Inserted Opposite A Templating G and Damp Inserted Opposite A Templating T At the Primer Terminus.
  36. 3uq4 - X-Ray Structure of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant F247L (F16L)
  37. 3uq5 - X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240A F247L (L9A F16L) in the Presence of 10 Mm Cysteamine
  38. 3ur7 - Higher-Density Crystal Structure of Potato Endo-1,3-Beta-Glucanase
  39. 3uu5 - The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution
  40. 3uu6 - The Glic Pentameric Ligand-Gated Ion Channel LOOP2-22' Mutant Reduced in Solution
  41. 3uu8 - The Glic Pentameric Ligand-Gated Ion Channel LOOP2-24' Mutant Reduced in Solution
  42. 3uub - The Glic Pentameric Ligand-Gated Ion Channel LOOP2-21' Mutant Reduced in Solution
  43. 3uvf - Expanding Lagalidadg Endonuclease Scaffold Diversity By Rapidly Surveying Evolutionary Sequence Space
  44. 3uwp - Crystal Structure of DOT1L in Complex With 5-Iodotubercidin
  45. 3uy7 - Designed Protein KE59 R1 7/10H With G130S Mutation
  46. 3uz5 - Designed Protein KE59 R13 3/11H
  47. 3v31 - Crystal Structure Of The Peptide Bound Complex Of the Ankyrin Repeat Domains of Human ANKRA2
  48. 3v4m - Crystal Structure Of A Rna Binding Domain of A U2 Small Nuclear Ribonucleoprotein Auxiliary Factor 2 (U2AF) From Mus Musculus At 1.80 A Resolution
  49. 3v6k - Replication of N2,3-Ethenoguanine By Dna Polymerases
  50. 3v6o - Leptin Receptor-Antibody Complex


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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