Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
      3qx5
      3r57
      3r9b
      3r9c
      3ra3
      3rga
      3rlw
      3rly
      3rm0
      3rm2
      3rml
      3rmm
      3rmn
      3rmo
      3rn1
      3rny
      3rwg
      3rwk
      3rws
      3s0t
      3s45
      3s54
      3s9o
      3sha
      3shc
      3shh
      3shx
      3si3
      3si4
      3sjl
      3sko
      3sla
      3spv
      3spx
      3suj
      3sv2
      3svw
      3sws
      3sxt
      3syu
      3szs
      3t34
      3t4u
      3t5f
      3t7z
      3t8j
      3t90
      3t9g
      3tbh
      3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 59 (2901-2950), PDB files 3qx5 - 3tfr






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2901-2950 (3qx5 - 3tfr):
  1. 3qx5 - Thrombin Inhibition By Pyridin Derivatives
  2. 3r57 - Human Cyclophilin D Complexed With A Fragment
  3. 3r9b - Crystal Structure of Mycobacterium Smegmatis CYP164A2 in Ligand Free State
  4. 3r9c - Crystal Structure of Mycobacterium Smegmatis CYP164A2 With Econazole Bound
  5. 3ra3 - Crystal Structure Of A Section of A De Novo Design Gigadalton Protein Fibre
  6. 3rga - Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis
  7. 3rlw - Human Thrombin in Complex With MI328
  8. 3rly - Human Thrombin in Complex With MI329
  9. 3rm0 - Human Thrombin in Complex With MI354
  10. 3rm2 - Human Thrombin in Complex With MI003
  11. 3rml - Human Thrombin in Complex With MI331
  12. 3rmm - Human Thrombin in Complex With MI332
  13. 3rmn - Human Thrombin in Complex With MI341
  14. 3rmo - Human Thrombin in Complex With MI004
  15. 3rn1 - Crystal Structure of the W199E-Maug/Pre-Methylamine Dehydrogenase Complex
  16. 3rny - Crystal Structure of Human RSK1 C-Terminal Kinase Domain
  17. 3rwg - Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9
  18. 3rwk - First Crystal Structure of An Endo-Inulinase, From Aspergillus Ficuum: Structural Analysis and Comparison With Other GH32 Enzymes.
  19. 3rws - Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex With Trans-Zeatin
  20. 3s0t - Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli
  21. 3s45 - Wild-Type Hiv-2 Protease With Antiviral Drug Amprenavir
  22. 3s54 - Hiv-1 Protease Triple Mutants V32I, I47V, V82I With Antiviral Drug Darunavir in Space Group P21212
  23. 3s9o - The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis
  24. 3sha - Human Thrombin in Complex With UBTHR97
  25. 3shc - Human Thrombin in Complex With UBTHR101
  26. 3shh - Crystal Structure of Glucarate Dehydratase From Agrobacterium Tumefaciens Complexed With Magnesium and L-Tartrate
  27. 3shx - Frog M-Ferritin With Magnesium, L134P Mutant
  28. 3si3 - Human Thrombin in Complex With UBTHR103
  29. 3si4 - Human Thrombin in Complex With UBTHR104
  30. 3sjl - Crystal Structure of the P107S-Maug/Pre-Methylamine Dehydrogenase Complex
  31. 3sko - Crystal Structure of A Peptide-Hla Structure
  32. 3sla - X-Ray Structure Of First Four Repeats of Human Beta-Catenin
  33. 3spv - Crystal Structure of A Peptide-Hla Complex
  34. 3spx - Crystal Structure of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani
  35. 3suj - Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1)
  36. 3sv2 - Human Thrombin in Complex With UBTHR105
  37. 3svw - Crystal Structure of the P107V-Maug/Pre-Methylamine Dehydrogenase Complex
  38. 3sws - Crystal Structure Of The Quinone Form Of Methylamine Dehydrogenase in Complex With the Diferric Form of Maug
  39. 3sxt - Crystal Structure Of The Quinol Form Of Methylamine Dehydrogenase in Complex With the Diferrous Form of Maug
  40. 3syu - Re-Refined Coordinates For Pdb Entry 1DET - Ribonuclease T1 Carboxymethylated At Glu 58 in Complex With 2'Gmp
  41. 3szs - Crystal Structure Analysis of Hellethionin D
  42. 3t34 - Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State
  43. 3t4u - L29I Mutation in An Aryl Esterase From Pseudomonas Fluorescens Leads to Unique Peptide Flip and Increased Activity
  44. 3t5f - Human Thrombin in Complex With MI340
  45. 3t7z - Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain
  46. 3t8j - Structural Analysis of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase
  47. 3t90 - Crystal Structure of Glucosamine-6-Phosphate N-Acetyltransferase From Arabidopsis Thaliana
  48. 3t9g - The Crystal Structure of Family 3 Pectate Lyase From Caldicellulosiruptor Bescii
  49. 3tbh - Crystal Structure Of O-Acetyl Serine Sulfhydrylase in Complex With Octapeptide Derived From Serine Acetyl Transferase of Leishmania Donovani
  50. 3tfr - Ternary Complex Structure of Dna Polymerase Beta With A Gapped Dna Substrate and A, B Damp(CF2)Pp in the Active Site


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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