Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
      3ow2
      3own
      3oyo
      3p0q
      3p1l
      3p2y
      3p3e
      3p3q
      3p7z
      3p8n
      3p8o
      3pa8
      3pak
      3paq
      3pbx
      3pc4
      3peb
      3pfv
      3pio
      3pip
      3pj0
      3ply
      3pm8
      3pml
      3pmn
      3pnc
      3pnx
      3pru
      3pvz
      3pzj
      3q2i
      3q3u
      3q94
      3q9b
      3q9c
      3q9e
      3q9f
      3qae
      3qau
      3qf9
      3qfh
      3qhx
      3qi6
      3qlj
      3qoo
      3qsr
      3qst
      3qto
      3qtv
      3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 58 (2851-2900), PDB files 3ow2 - 3qwc






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2851-2900 (3ow2 - 3qwc):
  1. 3ow2 - Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit
  2. 3own - Potent Macrocyclic Renin Inhibitors
  3. 3oyo - Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea
  4. 3p0q - Human Tankyrase 2 - Catalytic Parp Domain in Complex With An Inhibitor
  5. 3p1l - Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein Component of the Beta-Barrel Assembly Machinery Complex, Native Crystals.
  6. 3p2y - Crystal Structure of Alanine Dehydrogenase/Pyridine Nucleotide Transhydrogenase From Mycobacterium Smegmatis
  7. 3p3e - Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-009 Complex
  8. 3p3q - Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath At the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M
  9. 3p7z - Crystal Structure of The Neurofibromin SEC14-pH Module Containing the Patient Derived Mutation I1584V
  10. 3p8n - Crystal Structure of Hcv NS3/NS4A Protease Complexed With Bi 201335
  11. 3p8o - Crystal Structure Of Hcv NS3/NS4A Protease Complexed With Des-Bromine Analogue of Bi 201335
  12. 3pa8 - Structure of the C. Difficile Tcdb Cysteine Protease Domain in Complex With A Peptide Inhibitor
  13. 3pak - Crystal Structure of Rat Surfactant Protein A Neck and Carbohydrate Recognition Domain (Ncrd) Complexed With Mannose
  14. 3paq - Surfactant Protein A Neck and Carbohydrate Recognition Domain (Ncrd) Complexed With Alpha-Methylmannose
  15. 3pbx - Strontium Bound to the Sequence D(Ccggcgccgg)
  16. 3pc4 - Full Length Structure of Cystathionine Beta-Synthase From Drosophila in Complex With Serine
  17. 3peb - The Structure Of A CREATINE_N Superfamily Domain of A Dipeptidase From Streptococcus Thermophilus.
  18. 3pfv - Crystal Structure of Cbl-B Tkb Domain in Complex With Egfr PY1069 Peptide
  19. 3pio - Crystal Structure of The Synergistic Antibiotic Pair Lankamycin and Lankacidin in Complex With the Large Ribosomal Subunit
  20. 3pip - Crystal Structure of The Synergistic Antibiotic Pair Lankamycin and Lankacidin in Complex With the Large Ribosomal Subunit
  21. 3pj0 - Crystal Structure of A Putative L-Allo-Threonine Aldolase (LMO0305) From Listeria Monocytogenes Egd-E At 1.80 A Resolution
  22. 3ply - Structure Of Oxidized P96G Mutant of Amicyanin
  23. 3pm8 - Cad Domain of PFF0520W, Calcium Dependent Protein Kinase
  24. 3pml - Crystal Structure of A Polymerase Lambda Variant With A Dgtp Analog Opposite A Templating T
  25. 3pmn - Ternary Crystal Structure of Polymerase Lambda Variant With A Gt Mispair At The Primer Terminus With MN2+ in the Active Site
  26. 3pnc - Ternary Crystal Structure of A Polymerase Lambda Variant With A Gt Mispair At the Primer Terminus and Sodium At Catalytic Metal Site
  27. 3pnx - Crystal Structure of A Putative Sulfurtransferase Dsre (SWOL_2425) From Syntrophomonas Wolfei Str. Goettingen At 1.92 A Resolution
  28. 3pru - Crystal Structure of Phycobilisome 32.1 Kda Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A
  29. 3pvz - Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio Fischeri
  30. 3pzj - Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472
  31. 3q2i - Crystal Structure of the Wlba Dehydrognase From Chromobactrium Violaceum in Complex With Nadh and Udp-Glcnaca At 1.50 A Resolution
  32. 3q3u - Trametes Cervina Lignin Peroxidase
  33. 3q94 - The Crystal Structure of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'
  34. 3q9b - Crystal Structure of Apah Complexed With M344
  35. 3q9c - Crystal Structure of H159A Apah Complexed With N8-Acetylspermidine
  36. 3q9e - Crystal Structure of H159A Apah Complexed With Acetylspermine
  37. 3q9f - Crystal Structure of Apah Complexed With Caps
  38. 3qae - 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase of Streptococcus Pneumoniae
  39. 3qau - 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase From Streptococcus Pneumoniae
  40. 3qf9 - Crystal Structure of Human Proto-Oncogene Serine Threonine Kinase (PIM1) in Complex With A Consensus Peptide and A Furan- Thiazolidinedione Ligand
  41. 3qfh - 2.05 Angstrom Resolution Crystal Structure of Epidermin Leader Peptide Processing Serine Protease (Epip) From Staphylococcus Aureus.
  42. 3qhx - Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99 Bound to Hepes
  43. 3qi6 - Crystal Structure of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans AGY99
  44. 3qlj - Crystal Structure of A Short Chain Dehydrogenase From Mycobacterium Avium
  45. 3qoo - Crystal Structure of Hot-Dog-Like TACI_0573 Protein From Thermanaerovibrio Acidaminovorans
  46. 3qsr - Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile-45 Variant)
  47. 3qst - Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_096350 Gene (Val-45 Variant)
  48. 3qto - Thrombin Inhibition By Pyridin Derivatives
  49. 3qtv - Thrombin Inhibition By Pyridin Derivatives
  50. 3qwc - Thrombin Inhibition By Pyridin Derivatives


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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