Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
      3nu4
      3nu5
      3nu6
      3nuq
      3nvd
      3nw8
      3nwf
      3nys
      3nyt
      3nyu
      3nzo
      3o1c
      3o1x
      3o38
      3o4h
      3o4j
      3o65
      3o6p
      3o79
      3o7w
      3o8q
      3oam
      3oc4
      3od9
      3odd
      3odf
      3oe3
      3oec
      3of5
      3off
      3ogu
      3oi7
      3oib
      3ojp
      3ok0
      3ok9
      3okf
      3okt
      3olh
      3om1
      3on4
      3oo2
      3op0
      3opk
      3oq2
      3oq8
      3oqg
      3osj
      3osn
      3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 57 (2801-2850), PDB files 3nu4 - 3ot1






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2801-2850 (3nu4 - 3ot1):
  1. 3nu4 - Crystal Structure of Hiv-1 Protease Mutant V32I With Antiviral Drug Amprenavir
  2. 3nu5 - Crystal Structure of Hiv-1 Protease Mutant I50V With Antiviral Drug Amprenavir
  3. 3nu6 - Crystal Structure of Hiv-1 Protease Mutant I54M With Antiviral Drug Amprenavir
  4. 3nuq - Structure of A Putative Nucleotide Phosphatase From Saccharomyces Cerevisiae
  5. 3nvd - Structure of Ybbd in Complex With Pugnac
  6. 3nw8 - Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH
  7. 3nwf - Glycoprotein B From Herpes Simplex Virus Type 1, Low-pH
  8. 3nys - X-Ray Structure Of the K185A Mutant of Wbpe (Wlbe) From Pseudomonas Aeruginosa in Complex With Plp At 1.45 Angstrom Resolution
  9. 3nyt - X-Ray Crystal Structure of The Wlbe (Wpbe) Aminotransferase From Pseudomonas Aeruginosa, Mutation K185A, in Complex With the Plp External Aldimine Adduct With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3 Angstrom Resolution
  10. 3nyu - X-Ray Crystal Structure of The Wbpe (Wlbe) Aminotransferase From Pseudomonas Aeruginosa As the Plp Internal Aldimine Adduct With Lysine 185
  11. 3nzo - Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio Fischeri.
  12. 3o1c - High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C38A Mutant From Rabbit Complexed With Adenosine
  13. 3o1x - High Resolution Crystal Structure of Histidine Triad Nucleotide- Binding Protein 1 (HINT1) C84A Mutant From Rabbit Complexed With Adenosine
  14. 3o38 - Crystal Structure of A Short Chain Dehydrogenase From Mycobacterium Smegmatis
  15. 3o4h - Structure and Catalysis of Acylaminoacyl Peptidase
  16. 3o4j - Structure and Catalysis of Acylaminoacyl Peptidase
  17. 3o65 - Crystal Structure of A Josephin-Ubiquitin Complex: Evolutionary Restraints on Ataxin-3 Deubiquitinating Activity
  18. 3o6p - Crystal Structure of Peptide Abc Transporter, Peptide-Binding Protein
  19. 3o79 - Crystal Structure of Wild-Type Rabbit Prp 126-230
  20. 3o7w - The Crystal Structure of Human Leucine Carboxyl Methyltransferase 1
  21. 3o8q - 1.45 Angstrom Resolution Crystal Structure of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae
  22. 3oam - Crystal Structure of Cytidylyltransferase From Vibrio Cholerae
  23. 3oc4 - Crystal Structure of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From the Enterococcus Faecalis V583
  24. 3od9 - Crystal Structure Of Plii-Ah, Periplasmic Lysozyme Inhibitor of I-Type Lysozyme From Aeromonas Hydrophyla
  25. 3odd - Comparison Of The Character And The Speed Of X-Ray-Induced Structural Changes Of Porcine Pancreatic Elastase At Two Temperatures, 100 and 15K. The Data Set Was Collected From Region B Of the Crystal. Second Step of Radiation Damage
  26. 3odf - Comparison Of The Character And The Speed Of X-Ray-Induced Structural Changes Of Porcine Pancreatic Elastase At Two Temperatures, 100 and 15K. The Data Set Was Collected From Region A Of the Crystal. Second Step of Radiation Damage
  27. 3oe3 - Crystal Structure Of Plic-St, Periplasmic Lysozyme Inhibitor of C-Type Lysozyme From Salmonella Typhimurium
  28. 3oec - Crystal Structure of Carveol Dehydrogenase From Mycobacterium Thermoresistibile
  29. 3of5 - Crystal Structure of A Dethiobiotin Synthetase From Francisella Tularensis Subsp. Tularensis Schu S4
  30. 3off - Structured Domain of Drosophila Melanogaster Boca P65 2 2 Crystal Form
  31. 3ogu - Dna Polymerase Beta Mutant 5P20 Complexed With 6BP of Dna
  32. 3oi7 - Structure Of The Structure Of the H13A Mutant of YKR043C in Complex With Sedoheptulose-1,7-Bisphosphate
  33. 3oib - Crystal Structure of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak
  34. 3ojp - D52N Mutant of Hen Egg White Lysozyme (Hewl)
  35. 3ok0 - E35A Mutant of Hen Egg White Lysozyme (Hewl)
  36. 3ok9 - Crystal Structure of Wild-Type Hiv-1 Protease With New Oxatricyclic Designed Inhibitor Grl-0519A
  37. 3okf - 2.5 Angstrom Resolution Crystal Structure of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
  38. 3okt - Mouse Plexin A2, Extracellular Domains 1-4
  39. 3olh - Human 3-Mercaptopyruvate Sulfurtransferase
  40. 3om1 - Crystal Structure of the GLUK5 (KA2) Atd Dimer At 1.7 Angstrom Resolution
  41. 3on4 - Crystal Structure of Tetr Transcriptional Regulator From Legionella Pneumophila
  42. 3oo2 - 2.37 Angstrom Resolution Crystal Structure of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col
  43. 3op0 - Crystal Structure of Cbl-C (Cbl-3) Tkb Domain in Complex With Egfr PY1069 Peptide
  44. 3opk - Crystal Structure of Divalent-Cation Tolerance Protein Cuta From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. LT2
  45. 3oq2 - Structure of A Crispr Associated Protein CAS2 From Desulfovibrio Vulgaris
  46. 3oq8 - Crystal Structure of Isocitrate Lyase From Brucella Melitensis, Bound to the Product Mimic Malonate
  47. 3oqg - Restriction Endonuclease HPY188I in Complex With Substrate Dna
  48. 3osj - X-Ray Structure of Phycobilisome Lcm Core-Membrane Linker Polypeptide (Fragment 254-400) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR209C
  49. 3osn - Structural Basis For Proficient Incorporation of Dttp Opposite O6- Methylguanine By Human Dna Polymerase Iota
  50. 3ot1 - Crystal Structure of VC2308 Protein


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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