Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
      3l88
      3l8g
      3l8l
      3l8m
      3l8w
      3l9a
      3l9g
      3la1
      3lab
      3lbg
      3ld4
      3lde
      3lg1
      3lhc
      3ljq
      3ljw
      3lk9
      3lkb
      3llj
      3lnt
      3lo8
      3log
      3lp5
      3lp9
      3lqc
      3lrf
      3lrk
      3lrl
      3lsq
      3lss
      3lsu
      3lu1
      3lu9
      3lwd
      3lwl
      3lwm
      3lzw
      3lzx
      3m1a
      3m3m
      3m3u
      3m48
      3m5p
      3m7k
      3m8a
      3m92
      3ma9
      3mao
      3mat
      3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 54 (2651-2700), PDB files 3l88 - 3max






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2651-2700 (3l88 - 3max):
  1. 3l88 - Crystal Structure of the Human Adenovirus Type 21 Fiber Knob
  2. 3l8g - Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed With D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
  3. 3l8l - Gramicidin D Complex With Sodium Iodide
  4. 3l8m - Crystal Structure of A Probable Thiamine Pyrophosphokinase From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Consortium Target Id SYR86
  5. 3l8w - Urate Oxidase From Aspergillus Flavus Complexed With Xanthin
  6. 3l9a - Structure of the C-Terminal Domain From A Streptococcus Mutans Hypothetical
  7. 3l9g - Urate Oxidase Complexed With Uric Acid and Chloride
  8. 3la1 - High Resolution Crystal Structure of Cypet Mutant A167I
  9. 3lab - Crystal Structure of A Putative Kdpg (2-Keto-3-Deoxy-6- Phosphogluconate) Aldolase From Oleispira Antarctica
  10. 3lbg - Urate Oxidase Complexed With 8-Thio Xanthine
  11. 3ld4 - Urate Oxidase Complexed With 8-Nitro Xanthine
  12. 3lde - High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ and Further Soaked in 100 Mm Na+.
  13. 3lg1 - Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex With Sulfite)
  14. 3lhc - Crystal Structure of Cyanovirin-N Swapping Domain B Mutant
  15. 3ljq - Crystal Structure of the Glycosylasparaginase T152C Apo-Precursor
  16. 3ljw - Crystal Structure Of the Second Bromodomain of Human Polybromo
  17. 3lk9 - Dna Polymerase Beta With A Gapped Dna Substrate and Dtmp(CF2)P(CF2)P
  18. 3lkb - Crystal Structure of A Branched Chain Amino Acid Abc Transporter From Thermus Thermophilus With Bound Valine
  19. 3llj - Re-Investigated High Resolution Crystal Structure of Histidine Triad Nucleotide-Binding Protein 1 (HINT1) From Rabbit Complexed With Adenosine
  20. 3lnt - Crystal Structure of Phosphoglyceromutase From Burkholderia Pseudomallei 1710B With Bound Malonic Acid
  21. 3lo8 - Crystal Structure Of the Oxidized Form of Ferredoxin:Nadp+ Reductase From Maize Root At 1.05 Angstroms
  22. 3log - Crystal Structure of Mbti From Mycobacterium Tuberculosis
  23. 3lp5 - The Crystal Structure of the Putative Cell Surface Hydrolase From Lactobacillus Plantarum WCFS1
  24. 3lp9 - Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus
  25. 3lqc - X-Ray Crystal Structure of Oxidized XRCC1 Bound to Dna Pol Beta Palm Thumb Domain
  26. 3lrf - Crystal Structure of Beta-Ketoacyl Synthase From Brucella Melitensis
  27. 3lrk - Structure of Alfa-Galactosidase (MEL1) From Saccharomyces Cerevisiae
  28. 3lrl - Structure of Alfa-Galactosidase (MEL1) From Saccharomyces Cerevisiae With Melibiose
  29. 3lsq - Trypanosoma Brucei Seryl-Trna Synthetase
  30. 3lss - Trypanosoma Brucei Seryl-Trna Synthetase in Complex With Atp
  31. 3lsu - Crystal Structure of SOD2 From Saccharomyces Cerevisiae
  32. 3lu1 - Crystal Structure Analysis of Wbgu: A Udp-Galnac 4-Epimerase
  33. 3lu9 - Crystal Structure Of Human Thrombin Mutant S195A in Complex With the Extracellular Fragment of Human PAR1
  34. 3lwd - Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 At 1.88 A Resolution
  35. 3lwl - Structure Of Klenow Fragment of Taq Polymerase in Complex With An Abasic Site
  36. 3lwm - Structure Of the Large Fragment of Thermus Aquaticus Dna Polymerase I in Complex With A Blunt-Ended Dna and Ddatp
  37. 3lzw - Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I)
  38. 3lzx - Crystal Structure of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form II)
  39. 3m1a - The Crystal Structure of A Short-Chain Dehydrogenase From Streptomyces Avermitilis to 2A
  40. 3m3m - Crystal Structure of Glutathione S-Transferase From Pseudomonas Fluorescens [Pf-5]
  41. 3m3u - Effect of Temperature on Tryptophan Fluorescence in Lysozyme Crystals
  42. 3m48 - GCN4 Leucine Zipper Peptide Mutant
  43. 3m5p - Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed With Fructose-6-Phosphate.
  44. 3m7k - Crystal Structure of Paci-Dna Enzyme Product Complex
  45. 3m8a - Crystal Structure of Swine Flu Virus NS1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009
  46. 3m92 - The Structure of Ycin, An Unchracterized Protein From Shigella Flexneri.
  47. 3ma9 - Crystal Structure of GP41 Derived Protein Complexed With Fab 8066
  48. 3mao - Crystal Structure of Human Methionine-R-Sulfoxide Reductase B1 (MSRB1)
  49. 3mat - E.Coli Methionine Aminopeptidase Transition-State Inhibitor Complex
  50. 3max - Crystal Structure of Human HDAC2 Complexed With An N-(2-Aminophenyl) Benzamide


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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