Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
      3k13
      3k1s
      3k1u
      3k2l
      3k2o
      3k2q
      3k3l
      3k4g
      3k55
      3k5i
      3k6a
      3k6n
      3k7f
      3k93
      3k9g
      3k9x
      3kam
      3kax
      3kbc
      3kbi
      3kbk
      3ked
      3ker
      3keu
      3kgd
      3kgq
      3kii
      3kl0
      3klb
      3kn4
      3knt
      3kqb
      3kqc
      3kqd
      3kqe
      3krs
      3kw8
      3kwm
      3kyj
      3kzw
      3l0o
      3l1o
      3l25
      3l27
      3l28
      3l52
      3l55
      3l6i
      3l6t
      3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 53 (2601-2650), PDB files 3k13 - 3l7x






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2601-2650 (3k13 - 3l7x):
  1. 3k13 - Structure Of the Pterin-Binding Domain Metr of 5- Methyltetrahydrofolate-Homocysteine Methyltransferase From Bacteroides Thetaiotaomicron
  2. 3k1s - Crystal Structure of the Pts Cellobiose Specific Enzyme Iia From Bacillus Anthracis
  3. 3k1u - Beta-Xylosidase, Family 43 Glycosyl Hydrolase From Clostridium Acetobutylicum
  4. 3k2l - Crystal Structure of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (DYRK2)
  5. 3k2o - Structure of An Oxygenase
  6. 3k2q - Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88
  7. 3k3l - Crystal Structure of Siderocalin (Ngal, Lipocalin 2) Complexed With Apo Enterobactin
  8. 3k4g - Crystal Structure of E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain
  9. 3k55 - Structure Of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus
  10. 3k5i - Crystal Structure of N5-Carboxyaminoimidazole Synthase From Aspergillus Clavatus in Complex With Adp and 5- Aminoimadazole Ribonucleotide
  11. 3k6a - Crystal Structure of Molybdenum Cofactor Biosynthesis Protein Mog From Shewanella Oneidensis
  12. 3k6n - Crystal Structure of the S225E Mutant KIR3.1 Cytoplasmic Pore Domain
  13. 3k7f - Crystal Structure Analysis Of A Phenhexyl/Oxazole/Carboxypyridine Alpha-Ketoheterocycle Inhibitor Bound to A Humanized Variant of Fatty Acid Amide Hydrolase'
  14. 3k93 - Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT At 2.15 A Resolution
  15. 3k9g - Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi At 2.25A Resolution, Iodide Soak
  16. 3k9x - X-Ray Crystal Structure of Human Fxa in Complex With (S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2- (Pyrrolidin-1-Yl) Ethyl)Azepan-3- Ylamino)Methylene)Nicotinamide
  17. 3kam - Hen Egg White Lysozyme Derivatized With Rhenium(I) Diaquatricarbonyl Cation
  18. 3kax - Crystal Structure of A Putative C-S Lyase From Bacillus Anthracis
  19. 3kbc - Crystal Structure of Gltph K55C-A364C Mutant Crosslinked With Divalent Mercury
  20. 3kbi - Crystal Structure of Human Pl Kinase With Bound Theophylline
  21. 3kbk - Epi-Isozizaene Synthase Complexed With Hg
  22. 3ked - Crystal Structure of Aminopeptidase N in Complex With 2,4- Diaminobutyric Acid
  23. 3ker - D-Dopachrome Tautomerase (D-Dt)/ Macrophage Migration Inhibitory Factor 2 (MIF2) Complexed With Inhibitor 4-Ipp
  24. 3keu - Crystal Structure of Human Pl Kinase With Bound Plp and Atp
  25. 3kgd - Crystal Structure of E. Coli Rna 3' Cyclase
  26. 3kgq - Carboxypeptidase A Liganded to An Organic Small-Molecule: Conformational Changes
  27. 3kii - Agao 5-Phenoxy-2,3-Pentadienylamine Complex
  28. 3kl0 - Crystal Structure of the Glucuronoxylan Xylanohydrolase Xync From Bacillus Subtilis
  29. 3klb - Crystal Structure of Putative Flavoprotein in Complex With Fmn (YP_213683.1) From Bacteroides Fragilis Nctc 9343 At 1.75 A Resolution
  30. 3kn4 - Agao 6-Phenyl-2,3-Hexadienylamine Complex
  31. 3knt - Crystal Structure of Methanocaldococcus Jannaschii 8- Oxoguanine Glycosylase/Lyase in Complex With 15MER Dna Containing 8-Oxoguanine
  32. 3kqb - Factor Xa in Complex With the Inhibitor N-(3-Fluoro-2'- (Methylsulfonyl)Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1H- 1,2,4- Triazol-3-Yl)Phenyl)-3-(Trifluoromethyl)-1H- Pyrazole-5-Carboxamide
  33. 3kqc - Factor Xa in Complex With the Inhibitor 6-(2'- (Methylsulfonyl) Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1H- 1,2,4-Triazol-3-Yl) Phenyl)-3-(Trifluoromethyl)-5,6- Dihydro-1H-Pyrazolo[3,4-C]Pyridin- 7(4H)-One
  34. 3kqd - Factor Xa in Complex With the Inhibitor 1-(3-(5-Oxo-4,5- Dihydro-1H-1, 2,4-Triazol-3-Yl)Phenyl)-6-(2'-(Pyrrolidin-1- Ylmethyl)Biphenyl-4- Yl)-3-(Trifluoromethyl)-5,6-Dihydro- 1H-Pyrazolo[3,4-C]Pyridin-7(4H)- One
  35. 3kqe - Factor Xa in Complex With the Inhibitor 3-Methyl-1-(3-(5- Oxo-4,5- Dihydro-1H-1,2,4-Triazol-3-Yl)Phenyl)-6-(2'- (Pyrrolidin-1-Ylmethyl) Biphenyl-4-Yl)-5,6-Dihydro-1H- Pyrazolo[3,4-C]Pyridin-7(4H)-One
  36. 3krs - Structure of Triosephosphate Isomerase From Cryptosporidium Parvum At 1.55A Resolution
  37. 3kw8 - Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A Resolution
  38. 3kwm - Crystal Structure of Ribose-5-Isomerase A
  39. 3kyj - Crystal Structure Of the P1 Domain of CHEA3 in Complex With CHEY6 From R. Sphaeroides
  40. 3kzw - Crystal Structure of Cytosol Aminopeptidase From Staphylococcus Aureus Col
  41. 3l0o - Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima
  42. 3l1o - Crystal Structure Of Monoclonal Antibody MN423 Fab Fragment With Free Combining Site, Crystallized in the Presence of Zinc
  43. 3l25 - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna
  44. 3l27 - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant
  45. 3l28 - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain K339A Mutant
  46. 3l52 - Crystal Structure of Putative Orotidine 5'-Phosphate Decarboxylase From Streptomyces Avermitilis Ma-4680
  47. 3l55 - Crystal Structure of A Putative Beta-1,4-Endoglucanase / Cellulase From Prevotella Bryantii
  48. 3l6i - Crystal Structure of The Uncharacterized Lipoprotein Yceb From E. Coli At the Resolution 2.0A. Northeast Structural Genomics Consortium Target ER542
  49. 3l6t - Crystal Structure Of An N-Terminal Mutant of the Plasmid PCU1 Trai Relaxase Domain
  50. 3l7x - The Crystal Structure of Smu.412C From Streptococcus Mutans UA159


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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