Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
      3imm
      3imx
      3in1
      3ing
      3inj
      3inl
      3inm
      3inz
      3io1
      3io3
      3ipo
      3ipp
      3iqe
      3iqf
      3iqz
      3ird
      3irs
      3iru
      3isb
      3isc
      3isd
      3isq
      3iuo
      3iv2
      3ivt
      3ivu
      3iwf
      3iwj
      3iwk
      3jpo
      3jpp
      3jpq
      3jpr
      3jps
      3jpt
      3jpw
      3jpy
      3jr7
      3js4
      3js5
      3jtz
      3ju4
      3jvy
      3jw2
      3jy9
      3jz1
      3jzt
      3k04
      3k08
      3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 52 (2551-2600), PDB files 3imm - 3k0g






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2551-2600 (3imm - 3k0g):
  1. 3imm - Crystal Structure of Putative Glycosyl Hydrolase (YP_001301887.1) From Parabacteroides Distasonis Atcc 8503 At 2.00 A Resolution
  2. 3imx - Crystal Structure of Human Glucokinase in Complex With A Synthetic Activator
  3. 3in1 - Crystal Structure of A Putative Ribokinase in Complex With Adp From E.Coli
  4. 3ing - Crystal Structure of Homoserine Dehydrogenase (NP_394635.1) From Thermoplasma Acidophilum At 1.95 A Resolution
  5. 3inj - Human Mitochondrial Aldehyde Dehydrogenase Complexed With Agonist Alda-1
  6. 3inl - Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, Complexed With Agonist Alda-1
  7. 3inm - Crystal Structure of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132H Mutant in Complex With Nadph, Alpha-Ketoglutarate and Calcium(2+)
  8. 3inz - H57T Hfq From Pseudomonas Aeruginosa
  9. 3io1 - Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae
  10. 3io3 - GET3 With Adp From D. Hansenii in Closed Form
  11. 3ipo - Crystal Structure of Ynje
  12. 3ipp - Crystal Structure of Sulfur-Free Ynje
  13. 3iqe - Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex With Methylene-Tetrahydromethanopterin and Coenzyme F420
  14. 3iqf - Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex With Methenyl-Tetrahydromethanopterin
  15. 3iqz - Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex With Methylene-Tetrahydromethanopterin
  16. 3ird - Structure of Dihydrodipicolinate Synthase From Clostridium Botulinum
  17. 3irs - Crystal Structure of Uncharacterized Tim-Barrel Protein BB4693 From Bordetella Bronchiseptica
  18. 3iru - Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica
  19. 3isb - Binary Complex of Human Dna Polymerase Beta With A Gapped Dna
  20. 3isc - Binary Complex of Human Dna Polymerase Beta With An Abasic Site (Thf) in the Gapped Dna
  21. 3isd - Ternary Complex of Human Dna Polymerase Beta With An Abasic Site (Thf): Dapcpp Mismatch
  22. 3isq - Crystal Structure of Human 4-Hydroxyphenylpyruvate Dioxygenase
  23. 3iuo - The Crystal Structure Of The C-Terminal Domain of the Atp-Dependent Dna Helicase Recq From Porphyromonas Gingivalis to 1.6A
  24. 3iv2 - Crystal Structure of Mature Apo-Cathepsin L C25A Mutant
  25. 3ivt - Homocitrate Synthase LYS4 Bound to 2-Og
  26. 3ivu - Homocitrate Synthase LYS4 Bound to 2-Og
  27. 3iwf - The Crystal Structure Of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A
  28. 3iwj - Crystal Structure of Aminoaldehyde Dehydrogenase 2 From Pisum Sativum (PSAMADH2)
  29. 3iwk - Crystal Structure of Aminoaldehyde Dehydrogenase 1 From Pisum Sativum (PSAMADH1)
  30. 3jpo - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochloromethylene Triphosphate
  31. 3jpp - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monomethyl Methylene Triphosphate
  32. 3jpq - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monobromo Methylene Triphosphate
  33. 3jpr - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Dimethyl Methylene Triphosphate
  34. 3jps - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Fluoro Methyl Methylene Triphosphate
  35. 3jpt - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Fluoro Chloro Methylene Triphosphate
  36. 3jpw - Crystal Structure Of Amino Terminal Domain of the Nmda Receptor Subunit NR2B
  37. 3jpy - Crystal Structure Of The Zinc-Bound Amino Terminal Domain of the Nmda Receptor Subunit NR2B
  38. 3jr7 - The Crystal Structure Of the Protein of Degv Family COG1307 With Unknown Function From Ruminococcus Gnavus Atcc 29149
  39. 3js4 - Crystal Structure of Iron Superoxide Dismutase From Anaplasma Phagocytophilum
  40. 3js5 - Crystal Structure of Protein Tyrosine Phosphatase From Entamoeba Histolytica With Hepes In the Active Site. High Resolution, Alternative Crystal Form With 1 Molecule in Asymmetric Unit
  41. 3jtz - Structure Of the Arm-Type Binding Domain of Hpi Integrase
  42. 3ju4 - Crystal Structure Analysis of Endosialidasenf At 0.98 A Resolution
  43. 3jvy - Hiv-1 Protease Mutant G86A With Darunavir
  44. 3jw2 - Hiv-1 Protease Mutant G86S With Darunavir
  45. 3jy9 - Janus Kinase 2 Inhibitors
  46. 3jz1 - Crystal Structure of Human Thrombin Mutant N143P in E:Na+ Form
  47. 3jzt - Structure Of A Cubic Crystal Form of X (Adrp) Domain From Fcov With Adp-Ribose
  48. 3k04 - Crystal Structure of Cng Mimicking Nak Mutant, Nak-Dtpp, Na+ Complex
  49. 3k08 - Crystal Structure of Cng Mimicking Nak Mutant, Nak-Ntpp, Na+ Complex
  50. 3k0g - Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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