Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
      3fh4
      3fhw
      3fhx
      3fhy
      3fi5
      3fiu
      3fiy
      3fiz
      3fj0
      3fju
      3fkr
      3fl7
      3fm1
      3fo3
      3fob
      3fog
      3foj
      3fp4
      3fpc
      3fph
      3fr0
      3frm
      3fsx
      3fsy
      3fvb
      3fvi
      3fvs
      3fvu
      3fvx
      3fw4
      3fw5
      3fyh
      3fyo
      3fyp
      3fz3
      3fz4
      3fzq
      3g0r
      3g0t
      3g13
      3g1n
      3g20
      3g25
      3g3f
      3g3g
      3g3h
      3g3i
      3g3j
      3g3k
      3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 48 (2351-2400), PDB files 3fh4 - 3g3r






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2351-2400 (3fh4 - 3g3r):
  1. 3fh4 - Crystal Structure of Recombinant Vibrio Proteolyticus Aminopeptidase
  2. 3fhw - Crystal Structure of the Protein Prib From Bordetella Parapertussis. Northeast Structural Genomics Consortium Target BPR162.
  3. 3fhx - Crystal Structure Of D235A Mutant of Human Pyridoxal Kinase
  4. 3fhy - Crystal Structure Of D235N Mutant of Human Pyridoxal Kinase
  5. 3fi5 - Crystal Structure of T4 Lysozyme Mutant R96W
  6. 3fiu - Structure of Nmn Synthetase From Francisella Tularensis
  7. 3fiy - Crystal Structure of Bglb
  8. 3fiz - Crystal Structure of Bglb With Glucose
  9. 3fj0 - Crystal Structure of Bglb With Natural Substrate
  10. 3fju - Ascaris Suum Carboxypeptidase Inhibitor in Complex With Human Carboxypeptidase A1
  11. 3fkr - Structure of L-2-Keto-3-Deoxyarabonate Dehydratase Complex With Pyruvate
  12. 3fl7 - Crystal Structure of the Human Ephrin A2 Ectodomain
  13. 3fm1 - Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii
  14. 3fo3 - Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)
  15. 3fob - Crystal Structure of Bromoperoxidase From Bacillus Anthracis
  16. 3fog - Crystal Structure Of the Px Domain of Sorting Nexin-17 (SNX17)
  17. 3foj - Crystal Structure of SSP1007 From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Target SYR101A.
  18. 3fp4 - Crystal Structure of TOM71 Complexed With SSA1 C-Terminal Fragment
  19. 3fpc - Chimera Of Alcohol Dehydrogenase By Exchange Of the Cofactor Binding Domain Res 153-294 of T. Brockii Adh By E. Histolytica Adh
  20. 3fph - Crystal Structure Of E81Q Mutant of Mtnas in Complex With L-Glutamate
  21. 3fr0 - Human Glucokinase in Complex With 2-Amino Benzamide Activator
  22. 3frm - The Crystal Structure of A Functionally Unknown Conserved Protein From Staphylococcus Epidermidis Atcc 12228.
  23. 3fsx - Structure of Tetrahydrodipicolinate N-Succinyltransferase (RV1201C; Dapd) From Mycobacterium Tuberculosis
  24. 3fsy - Structure of Tetrahydrodipicolinate N-Succinyltransferase (RV1201C;Dapd) in Complex With Succinyl-Coa From Mycobacterium Tuberculosis
  25. 3fvb - Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis
  26. 3fvi - Crystal Structure Of Complex of Phospholipase A2 With Octyl Sulfates
  27. 3fvs - Human Kynurenine Aminotransferase I in Complex With Glycerol
  28. 3fvu - Crystal Structure of Human Kynurenine Aminotransferase I in Complex With Indole-3-Acetic Acid
  29. 3fvx - Human Kynurenine Aminotransferase I in Complex With Tris
  30. 3fw4 - Crystal Structure of Siderocalin (Ngal, Lipocalin 2) Complexed With Ferric Catechol
  31. 3fw5 - Crystal Structure of Siderocalin (Ngal, Lipocalin 2) Complexed With Ferric 4-Methyl-Catechol
  32. 3fyh - Recombinase in Complex With Adp and Metatungstate
  33. 3fyo - Crystal Structure Of the Triple Mutant (N23C/D247E/P249A) of 3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
  34. 3fyp - Crystal Structure Of the Quadruple Mutant (N23C/C246S/D247E/P249A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
  35. 3fz3 - Crystal Structure of Almond PRU1 Protein
  36. 3fz4 - The Crystal Structure of A Possible Arsenate Reductase From Streptococcus Mutans UA159
  37. 3fzq - Crystal Structure of Putative Haloacid Dehalogenase-Like Hydrolase (YP_001086940.1) From Clostridium Difficile 630 At 2.10 A Resolution
  38. 3g0r - Complex of MTH0212 and An 8BP Dsdna With Distorted Ends
  39. 3g0t - Crystal Structure of Putative Aspartate Aminotransferase (NP_905498.1) From Porphyromonas Gingivalis W83 At 1.75 A Resolution
  40. 3g13 - Crystal Structure of Putative Conjugative Transposon Recombinase From Clostridium Difficile
  41. 3g1n - Catalytic Domain of the Human E3 Ubiquitin-Protein Ligase HUWE1
  42. 3g20 - Crystal Structure Of The Major Pseudopilin From the Type 2 Secretion System of Enterohaemorrhagic Escherichia Coli
  43. 3g25 - 1.9 Angstrom Crystal Structure of Glycerol Kinase (Glpk) From Staphylococcus Aureus in Complex With Glycerol.
  44. 3g3f - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer With Glutamate and Nacl At 1.38 Angstrom Resolution
  45. 3g3g - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer K665R Mutant With Glutamate and Nacl At 1.3 Angstrom Resolution
  46. 3g3h - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer K665R I749L Q753K Mutant With Glutamate and Nacl At 1.5 Angstrom Resolution
  47. 3g3i - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer I442H K494E I749L Q753K Mutant With Glutamate and Nacl At 1.37 Angstrom Resolution
  48. 3g3j - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer I442H K494E K665R I749L Q753K Mutant With Glutamate and Nacl At 1.32 Angstrom Resolution
  49. 3g3k - Crystal Structure of the GLUR6 Ligand Binding Domain Dimer I442H K494E K665R I749L Q753K E757Q Mutant With Glutamate and Nacl At 1.24 Angstrom Resolution
  50. 3g3r - Crystal Structure of A Eukaryotic Polyphosphate Polymerase in Complex With Appnhp-MN2+


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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