Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
      3e40
      3e41
      3e42
      3e45
      3e4v
      3e5u
      3e6p
      3e6q
      3e7b
      3e83
      3e85
      3e86
      3e89
      3e8g
      3e8l
      3e9l
      3eat
      3eb5
      3ebz
      3ec0
      3ecg
      3ecq
      3ed4
      3eeb
      3efp
      3egk
      3eif
      3eiy
      3ekl
      3ekz
      3elf
      3ems
      3ens
      3enz
      3eoj
      3eor
      3epg
      3epi
      3epr
      3ept
      3epz
      3eq0
      3eqc
      3eqd
      3eqf
      3eqg
      3eqh
      3eqi
      3eqn
      3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 46 (2251-2300), PDB files 3e40 - 3erp






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2251-2300 (3e40 - 3erp):
  1. 3e40 - Q138F Hincii Bound to Gttaac and Cocrystallized With 5 Mm CA2+
  2. 3e41 - Q138F Hincii Bound to Gtcgac and 5 Mm CA2+
  3. 3e42 - Q138F Hincii Bound to Gtcgac and CA2+ (Cocrystallized)
  4. 3e45 - Q138F Hincii Bound to Noncognate Dna (Gtgcac) and CA2+
  5. 3e4v - Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex With Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt At 1.40 A Resolution
  6. 3e5u - Ocpa Complexed Cprk (C200S)
  7. 3e6p - Crystal Structure of Human Meizothrombin DESF1
  8. 3e6q - Putative 5-Carboxymethyl-2-Hydroxymuconate Isomerase From Pseudomonas Aeruginosa.
  9. 3e7b - Crystal Structure of Protein Phosphatase-1 Bound to the Natural Toxin Inhibitor Tautomycin
  10. 3e83 - Crystal Structure of The the Open Nak Channel Pore
  11. 3e85 - Crystal Structure of Pathogenesis-Related Protein Llpr-10.2B From Yellow Lupine in Complex With Diphenylurea
  12. 3e86 - High Resolution Crystal Structure of the Open Nak Channel Pore
  13. 3e89 - Crystal Structure of The the Open Nak Channel-Low Na+ Complex
  14. 3e8g - Crystal Structure of The the Open Nak Channel-Na+/CA2+ Complex
  15. 3e8l - The Crystal Structure of the Double-Headed Arrowhead Protease Inhibitor A in Complex With Two Trypsins
  16. 3e9l - Crystal Structure of Human PRP8, Residues 1755-2016
  17. 3eat - Crystal Structure of the Pvcb (PA2255) Protein From Pseudomonas Aeruginosa
  18. 3eb5 - Structure of the CIAP2 Ring Domain
  19. 3ebz - High Resolution Hiv-2 Protease Structure in Complex With Clinical Drug Darunavir
  20. 3ec0 - High Resolution Hiv-2 Protease Structure in Complex With Antiviral Inhibitor Grl-06579A
  21. 3ecg - High Resolution Hiv-2 Protease Structure in Complex With Antiviral Inhibitor Grl-98065
  22. 3ecq - Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus Pneumoniae: Semet Structure
  23. 3ed4 - Crystal Structure of Putative Arylsulfatase From Escherichia Coli
  24. 3eeb - Structure of the V. Cholerae Rtx Cysteine Protease Domain
  25. 3efp - Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form
  26. 3egk - Knoble Inhibitor
  27. 3eif - 1.9 Angstrom Crystal Structure Of The Active Form of the C5A Peptidase From Streptococcus Pyogenes (Scpa)
  28. 3eiy - Crystal Structure of Inorganic Pyrophosphatase From Burkholderia Pseudomallei With Bound Pyrophosphate
  29. 3ekl - Structural Characterization Of Tetrameric Mycobacterium Tuberculosis Fructose 1,6-Bisphosphate Aldolase - Substrate Binding and Catalysis Mechanism of A Class Iia Bacterial Aldolase
  30. 3ekz - Structural Characterization Of Tetrameric Mycobacterium Tuberculosis Fructose 1,6-Bisphosphate Aldolase - Substrate Binding and Catalysis Mechanism of A Class Iia Bacterial Aldolase
  31. 3elf - Structural Characterization Of Tetrameric Mycobacterium Tuberculosis Fructose 1,6-Bisphosphate Aldolase - Substrate Binding and Catalysis Mechanism of A Class Iia Bacterial Aldolase
  32. 3ems - Effect of Ariginine on Lysozyme
  33. 3ens - Crystal Structure of Human Fxa in Complex With Methyl (2Z)-3-[(3- Chloro-1H-Indol-7-Yl)Amino]-2-Cyano-3-{[(3S)-2-Oxo-1-(2-Oxo-2- Pyrrolidin-1-Ylethyl)Azepan-3-Yl]Amino}Acrylate
  34. 3enz - Arsenolytic Structure of Plasmodium Falciparum Purine Nucleoside Phosphorylase With Hypoxanthine, Ribose and Arsenate Ion
  35. 3eoj - Fmo Protein From Prosthecochloris Aestuarii 2K At 1.3A Resolution
  36. 3eor - Crystal Structure of 2C-Methyl-D-Erythritol 2,4- Clycodiphosphate Synthase Complexed With Ligand
  37. 3epg - Structure of Human Dna Polymerase Iota Complexed With N2-Ethylguanine
  38. 3epi - Structure of Human Dna Polymerase Iota Complexed With N2-Ethylguanine and Incoming Ttp
  39. 3epr - Crystal Structure of Putative Had Superfamily Hydrolase From Streptococcus Agalactiae.
  40. 3ept - Structure of the Rebeccamycin Biosynthetic Enzyme Rebc With Reduced Flavin
  41. 3epz - Structure Of the Replication Foci-Targeting Sequence of Human Dna Cytosine Methyltransferase DNMT1
  42. 3eq0 - Thrombin Inhibitor
  43. 3eqc - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex With Compound 1, Atp-Gs and MG2P
  44. 3eqd - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Binary Complex With Atp-Gs and MG2P
  45. 3eqf - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Binary Complex With K252A and MG2P
  46. 3eqg - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex With Pd, Adp and MG2P
  47. 3eqh - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Ternary Complex With U0126, Adp and MG2P
  48. 3eqi - X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Binary Complex With Adp and MG2P
  49. 3eqn - Crystal Structure of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (LAM55A)
  50. 3erp - Structure Of IDP01002, A Putative Oxidoreductase From and Essential Gene of Salmonella Typhimurium


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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