Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
      3d97
      3d9r
      3da9
      3dav
      3dbo
      3dc7
      3ddk
      3ddr
      3deb
      3dfh
      3dh4
      3dhk
      3dig
      3dil
      3dim
      3dio
      3diq
      3dir
      3dis
      3dix
      3diy
      3diz
      3dj0
      3dj2
      3djk
      3djy
      3dk1
      3dki
      3dkk
      3dl2
      3dm3
      3dnx
      3dr3
      3drw
      3dsq
      3dt0
      3dt2
      3dt4
      3dt7
      3dtb
      3dux
      3dym
      3dyo
      3dyp
      3dyq
      3dzd
      3e0y
      3e1f
      3e3t
      3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 45 (2201-2250), PDB files 3d97 - 3e3y






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2201-2250 (3d97 - 3e3y):
  1. 3d97 - Crystal Structure Of the R132K:R111L:L121E Mutant of Apo- Cellular Retinoic Acid Binding Protein Type II At 1.50 Angstroms Resolution
  2. 3d9r - Crystal Structure of Ketosteroid Isomerase-Like Protein (YP_049581.1) From Erwinia Carotovora Atroseptica SCRI1043 At 2.40 A Resolution
  3. 3da9 - Crystal Structure of Thrombin in Complex With Inhibitor
  4. 3dav - Schizosaccharomyces Pombe Profilin Crystallized From Sodium Formate
  5. 3dbo - Crystal Structure Of A Member Of the Vapbc Family of Toxin-Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
  6. 3dc7 - Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109.
  7. 3ddk - Coxsackievirus B3 3DPOL Rna Dependent Rna Polymerase
  8. 3ddr - Structure of the Serratia Marcescens Hemophore Receptor Hasr-ILE671GLY Mutant in Complex With Its Hemophore Hasa and Heme
  9. 3deb - Crystal Structure Of Apo Form (Zinc Removed) of the Botulinum Neurotoxin Type C Light Chain
  10. 3dfh - Crystal Structure of Putative Mandelate Racemase / Muconate Lactonizing Enzyme From Vibrionales Bacterium Swat-3
  11. 3dh4 - Crystal Structure of Sodium/Sugar Symporter With Bound Galactose From Vibrio Parahaemolyticus
  12. 3dhk - Bisphenylic Thrombin Inhibitors
  13. 3dig - Crystal Structure of the Thermotoga Maritima Lysine Riboswitch Bound to S-(2-Aminoethyl)-L-Cysteine
  14. 3dil - Crystal Structure of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine
  15. 3dim - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine, Cs+ Soak
  16. 3dio - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine, Iridium Hexamine Soak
  17. 3diq - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Homoarginine
  18. 3dir - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to N6-1-Iminoethyl-L-Lysine
  19. 3dis - Crystallization of the Thermotoga Maritima Lysine Riboswitch in Free Form
  20. 3dix - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine, K+ Anomalous Data
  21. 3diy - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine, MN2+ Soak
  22. 3diz - Crystallization Of The Thermotoga Maritima Lysine Riboswitch Bound to Lysine in the Absence of MG2+
  23. 3dj0 - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to L-4-Oxalysine
  24. 3dj2 - Crystallization of the Thermotoga Maritima Lysine Riboswitch Bound to Lysine, Tl+ Soak
  25. 3djk - Wild Type Hiv-1 Protease With Potent Antiviral Inhibitor Grl-0255A
  26. 3djy - Nonaged Form of Human Butyrylcholinesterase Inhibited By Tabun
  27. 3dk1 - Wild Type Hiv-1 Protease With Potent Antiviral Inhibitor Grl-0105A
  28. 3dki - 2.1 A X-Ray Structure of Cysm (RV1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase
  29. 3dkk - Aged Form of Human Butyrylcholinesterase Inhibited By Tabun
  30. 3dl2 - Hexagonal Structure Of the Ldh Domain of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A
  31. 3dm3 - Crystal Structure Of A Domain of A Replication Factor A Protein, From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target MJR118E
  32. 3dnx - SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi.
  33. 3dr3 - Structure of IDP00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri
  34. 3drw - Crystal Structure of A Phosphofructokinase From Pyrococcus Horikoshii OT3 With Amp
  35. 3dsq - Structure of Desulfitobacterium Hafniense Pylsc, A Pyrrolysyl Trna Synthetase
  36. 3dt0 - Understanding Thrombin Inhibition
  37. 3dt2 - The Structure of Rat Cytosolic Pepck in Complex With Oxalate and Gtp
  38. 3dt4 - The Structure of Rat Cytosolic Pepck in Complex With Oxalate and Gtp
  39. 3dt7 - The Structure of Rat Cytosolic Pepck in Complex With Beta- Sulfopyruvate and Gtp
  40. 3dtb - The Structure of Rat Cytosolic Pepck in Complex With Phosphoglycolate and Gdp
  41. 3dux - Understanding Thrombin Inhibition
  42. 3dym - E. Coli (Lacz) Beta-Galactosidase (H418E)
  43. 3dyo - E. Coli (Lacz) Beta-Galactosidase (H418N) in Complex With Iptg
  44. 3dyp - E. Coli (Lacz) Beta-Galactosidase (H418N)
  45. 3dyq - Human Phosphodiestrase 9 (Inhibited By Omitting Divalent Cation) in Complex With Cgmp
  46. 3dzd - Crystal Structure of SIGMA54 Activator NTRC4 in the Inactive State
  47. 3e0y - The Crystal Structure Of A Conserved Domain From A Protein of Geobacter Sulfurreducens Pca
  48. 3e1f - E.Coli (Lacz) Beta-Galactosidase (H418E) in Complex With Galactose
  49. 3e3t - Structure of Porcine Pancreatic Elastase With the Magic Triangle I3C
  50. 3e3y - Q138F Hincii Bound to Gttaac and Cocrystallized With 5 Mm CA2+


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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