Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
      3bov
      3bpr
      3bpx
      3brq
      3bv8
      3bv9
      3bvb
      3bx1
      3bx2
      3bzl
      3c0s
      3c0v
      3c0w
      3c17
      3c1q
      3c2k
      3c2l
      3c2m
      3c32
      3c3v
      3c45
      3c4u
      3c52
      3c5f
      3c5g
      3c6v
      3c7e
      3c7f
      3c7g
      3c7h
      3c7o
      3c7t
      3c7x
      3c87
      3c88
      3c9f
      3cb8
      3cbc
      3cbt
      3cc2
      3cc4
      3cc7
      3cc9
      3cce
      3ccj
      3ccl
      3ccm
      3cco
      3ccq
      3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 43 (2101-2150), PDB files 3bov - 3ccr






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2101-2150 (3bov - 3ccr):
  1. 3bov - Crystal Structure Of the Receptor Binding Domain of Mouse Pd-L2
  2. 3bpr - Crystal Structure Of Catalytic Domain of the Proto-Oncogene Tyrosine- Protein Kinase Mer in Complex With Inhibitor C52
  3. 3bpx - Crystal Structure of Marr
  4. 3brq - Crystal Structure of the Escherichia Coli Transcriptional Repressor Ascg
  5. 3bv8 - Crystal Structure Of the N-Terminal Domain of Tetrahydrodipicolinate Acetyltransferase From Staphylococcus Aureus
  6. 3bv9 - Structure of Thrombin Bound to the Inhibitor FM19
  7. 3bvb - Cystal Structure of Hiv-1 Active Site Mutant D25N and Inhibitor Darunavir
  8. 3bx1 - Complex Between The Barley Alpha-Amylase/Subtilisin Inhibitor and the Subtilisin Savinase
  9. 3bx2 - PUF4 Rna Binding Domain Bound to Ho Endonuclease Rna 3' Utr Recognition Sequence
  10. 3bzl - Crystal Structural of Native Escu C-Terminal Domain
  11. 3c0s - Uvde 3 Metals
  12. 3c0v - Crystal Structure of Cytokinin-Specific Binding Protein in Complex With Cytokinin and TA6BR12
  13. 3c0w - I-Scei in Complex With A Bottom Nicked Dna Substrate
  14. 3c17 - Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) With Active-Site T179A Mutation
  15. 3c1q - The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From the Type 2 Secretion System of Vibrio Cholerae
  16. 3c2k - Dna Polymerase Beta With A Gapped Dna Substrate and Dumpnpp With Manganese in the Active Site
  17. 3c2l - Ternary Complex of Dna Polymerase Beta With A C:Dapcpp Mismatch in the Active Site
  18. 3c2m - Ternary Complex of Dna Polymerase Beta With A G:Dapcpp Mismatch in the Active Site
  19. 3c32 - Crystal Structure of GLUR5 Ligand-Binding Core in Complex With Sodium At 1.72 Angstrom Resolution
  20. 3c3v - Crystal Structure of Peanut Major Allergen Ara H 3
  21. 3c45 - Human Dipeptidyl Peptidase IV/CD26 in Complex With A Fluoroolefin Inhibitor
  22. 3c4u - Structure of Class II Fructose-Biphosphate Aldolase From Helicobacter Pylori
  23. 3c52 - Class II Fructose-1,6-Bisphosphate Aldolase From Helicobacter Pylori in Complex With Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
  24. 3c5f - Structure Of A Binary Complex of the R517A Pol Lambda Mutant
  25. 3c5g - Structure Of A Ternary Complex of the R517K Pol Lambda Mutant
  26. 3c6v - Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus
  27. 3c7e - Crystal Structure of A Glycoside Hydrolase Family 43 Arabinoxylan Arabinofuranohydrolase From Bacillus Subtilis.
  28. 3c7f - Crystal Structure of A Glycoside Hydrolase Family 43 Arabinoxylan Arabinofuranohydrolase From Bacillus Subtilis in Complex With Xylotriose.
  29. 3c7g - Crystal Structure of A Glycoside Hydrolase Family 43 Arabinoxylan Arabinofuranohydrolase From Bacillus Subtilis in Complex With Xylotetraose.
  30. 3c7h - Crystal Structure of Glycoside Hydrolase Family 43 Arabinoxylan Arabinofuranohydrolase From Bacillus Subtilis in Complex With Axos-4- 0.5.
  31. 3c7o - Crystal Structure of A Glycoside Hydrolase Family 43 Arabinoxylan Arabinofuranohydrolase From Bacillus Subtilis in Complex With Cellotetraose.
  32. 3c7t - Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex With Tungstate
  33. 3c7x - Hemopexin-Like Domain of Matrix Metalloproteinase 14
  34. 3c87 - Crystal Structure Of The Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin
  35. 3c88 - Crystal Structure Of the Catalytic Domain of Botulinum Neurotoxin Serotype A With Inhibitory Peptide Rrgc
  36. 3c9f - Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314
  37. 3cb8 - 4FE-4S-Pyruvate Formate-Lyase Activating Enzyme in Complex With Adomet and A Peptide Substrate
  38. 3cbc - Crystal Structure of Siderocalin (Ngal, Lipocalin 2) Y106F Complexed With Ferric Enterobactin
  39. 3cbt - Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor
  40. 3cc2 - The Refined Crystal Structure of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins
  41. 3cc4 - Co-Crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
  42. 3cc7 - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation C2487U
  43. 3cc9 - Crystal Structure of Plasmodium Vivax Putative Polyprenyl Pyrophosphate Synthase in Complex With Geranylgeranyl Diphosphate
  44. 3cce - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation U2535A
  45. 3ccj - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation C2534U
  46. 3ccl - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation U2535C. Density For Anisomycin Is Visible But Not Included in Model.
  47. 3ccm - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation G2611U
  48. 3cco - Structural Adaptation and Conservation in Quadruplex-Drug Recognition
  49. 3ccq - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation A2488U
  50. 3ccr - Structure of Anisomycin Resistant 50S Ribosomal Subunit: 23S Rrna Mutation A2488C. Density For Anisomycin Is Visible But Not Included in the Model.


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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