Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
      3b2n
      3b2p
      3b2s
      3b2x
      3b34
      3b35
      3b37
      3b3b
      3b3c
      3b3s
      3b3t
      3b3v
      3b3w
      3b5g
      3b6e
      3b6p
      3b72
      3b76
      3b7i
      3b7v
      3b80
      3b81
      3b8x
      3b9b
      3b9g
      3baw
      3bax
      3bc9
      3bcd
      3bcf
      3be8
      3beu
      3bft
      3bga
      3bh4
      3bh9
      3bhd
      3bia
      3bib
      3biu
      3bjp
      3bk8
      3bkc
      3bkm
      3blj
      3bmo
      3bmx
      3bn1
      3bnt
      3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 42 (2051-2100), PDB files 3b2n - 3bos






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 2051-2100 (3b2n - 3bos):
  1. 3b2n - Crystal Structure of Dna-Binding Response Regulator, Luxr Family, From Staphylococcus Aureus
  2. 3b2p - Crystal Structure of E. Coli Aminopeptidase N in Complex With Arginine
  3. 3b2s - Crystal Sructure of F. Graminearum TRI101 Complexed With Coenzyme A and Deoxynivalenol
  4. 3b2x - Crystal Structure of E. Coli Aminopeptidase N in Complex With Lysine
  5. 3b34 - Crystal Structure of E. Coli Aminopeptidase N in Complex With Phenylalanine
  6. 3b35 - Crystal Structure Of The M180A Mutant of the Aminopeptidase From Vibrio Proteolyticus
  7. 3b37 - Crystal Structure of E. Coli Aminopeptidase N in Complex With Tyrosine
  8. 3b3b - Crystal Structure of E. Coli Aminopeptidase N in Complex With Tryptophan
  9. 3b3c - Crystal Structure Of The M180A Mutant of the Aminopeptidase From Vibrio Proteolyticus in Complex With Leucine Phosphonic Acid
  10. 3b3s - Crystal Structure Of The M180A Mutant of the Aminopeptidase From Vibrio Proteolyticus in Complex With Leucine
  11. 3b3t - Crystal Structure Of The D118N Mutant of the Aminopeptidase From Vibrio Proteolyticus
  12. 3b3v - Crystal Structure Of The S228A Mutant of the Aminopeptidase From Vibrio Proteolyticus
  13. 3b3w - Crystal Structure Of The S228A Mutant of the Aminopeptidase From Vibrio Proteolyticus in Complex With Leucine
  14. 3b5g - Crystal Structure Of The Unstable and Highly Fibrillogenic PRO7SER Mutant of the Recombinant Variable Domain 6AJL2
  15. 3b6e - Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain
  16. 3b6p - Structure of TREX1 in Complex With A Nucleotide And Inhibitor Ions (Sodium and Zinc)
  17. 3b72 - Crystal Structure of Lysozyme Folded in Sds and 2-Methyl-2, 4-Pentanediol
  18. 3b76 - Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-Numb Protein-X (LNX1) in Complex With The C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor
  19. 3b7i - Crystal Structure Of The S228A Mutant of the Aminopeptidase From Vibrio Proteolyticus in Complex With Leucine Phosphonic Acid
  20. 3b7v - Hiv-1 Protease Complexed With Gem-Diol-Amine Tetrahedral Intermediate Nlltqi
  21. 3b80 - Hiv-1 Protease Mutant I54V Complexed With Gem-Diol-Amine Intermediate Nlltqi
  22. 3b81 - Crystal Structure Of Predicted Dna-Binding Transcriptional Regulator of Tetr/Acrr Family (NP_350189.1) From Clostridium Acetobutylicum At 2.10 A Resolution
  23. 3b8x - Crystal Structure of Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188N Mutant With Bound Gdp-Perosamine
  24. 3b9b - Structure Of The E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase
  25. 3b9g - Crystal Structure Of Loop Deletion Mutant of Trypanosoma Vivax Nucleoside Hydrolase (3GTVNH) in Complex With Immh
  26. 3baw - Human Pancreatic Alpha-Amylase Complexed With Azide
  27. 3bax - N298S Variant of Human Pancreatic Alpha-Amylase in Complex With Azide
  28. 3bc9 - Alpha-Amylase B in Complex With Acarbose
  29. 3bcd - Alpha-Amylase B in Complex With Maltotetraose and Alpha-Cyclodextrin
  30. 3bcf - Alpha-Amylase B From Halothermothrix Orenii
  31. 3be8 - Crystal Structure of the Synaptic Protein Neuroligin 4
  32. 3beu - Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity
  33. 3bft - Structure Of The Ligand-Binding Core of GLUR2 in Complex With the Agonist (S)-Tdpa At 2.25 A Resolution
  34. 3bga - Crystal Structure of Beta-Galactosidase From Bacteroides Thetaiotaomicron Vpi-5482
  35. 3bh4 - High Resolution Crystal Structure of Bacillus Amyloliquefaciens Alpha-Amylase
  36. 3bh9 - Crystal Structure of Rty Phosphopeptide Bound to Human Class I Mhc Hla-A2
  37. 3bhd - Crystal Structure of Human Thiamine Triphosphatase (Thtpa)
  38. 3bia - Tim-4 in Complex With Sodium Potassium Tartrate
  39. 3bib - Tim-4 in Complex With Phosphatidylserine
  40. 3biu - Human Thrombin-in Complex With Ub-THR10
  41. 3bjp - Urate Oxidase Cyanide Uric Acid Ternary Complex
  42. 3bk8 - Urate Oxidase Aza-Xanthine Complex in Cyanide
  43. 3bkc - Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb)
  44. 3bkm - Structure of Anti-Amyloid-Beta Fab WO2 (Form A, P212121)
  45. 3blj - Crystal Structure of Human Poly(Adp-Ribose) Polymerase 15, Catalytic Fragment
  46. 3bmo - Structure of Pteridine Reductase 1 (PTR1) From Trypanosoma Brucei in Ternary Complex With Cofactor (Nadp+) and Inhibitor (Compound AX4)
  47. 3bmx - Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
  48. 3bn1 - Crystal Structure of Gdp-Perosamine Synthase
  49. 3bnt - Crystal Structure Of The Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative)
  50. 3bos - Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B At 1.75 A Resolution


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
© Copyright 2008-2012 by atomistry.com