Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
      2zfr
      2zg0
      2zgb
      2zgx
      2zhe
      2zhf
      2zhi
      2zhj
      2zhq
      2zhw
      2zi2
      2zij
      2zik
      2zil
      2ziq
      2zj9
      2zk9
      2zka
      2zkb
      2zn8
      2znb
      2znd
      2zne
      2znk
      2zo3
      2zo5
      2zoq
      2zq3
      2zs7
      2zs9
      2zsa
      2zsd
      2zse
      2zsf
      2zsg
      2zxk
      2zxl
      2zxs
      2zxw
      2zyl
      2zyp
      352d
      378d
      3a03
      3a07
      3a0i
      3a34
      3a65
      3a66
      3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 40 (1951-2000), PDB files 2zfr - 3a6s






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1951-2000 (2zfr - 3a6s):
  1. 2zfr - Exploring Thrombin S3 Pocket
  2. 2zg0 - Exploring Thrombin S3 Pocket
  3. 2zgb - Thrombin Inhibition
  4. 2zgx - Thrombin Inhibition
  5. 2zhe - Exploring Thrombin S3 Pocket
  6. 2zhf - Exploring Thrombin S3 Pocket
  7. 2zhi - Crystal Structure Analysis of the Sodium-Bound Annexin A4 At 1.58 A Resolution
  8. 2zhj - Crystal Structure Analysis of the Sodium-Bound Annexin A4 At 1.34 A Resolution
  9. 2zhq - Thrombin Inhibition
  10. 2zhw - Exploring Thrombin S3 Pocket
  11. 2zi2 - Thrombin Inhibition
  12. 2zij - Crystal Structure of Human Lysozyme Expressed in E. Coli.
  13. 2zik - Crystal Structure of Human Lysozyme From Pichia Pastoris
  14. 2zil - Crystal Structure of Human Lysozyme From Urine
  15. 2ziq - Thrombin Inhibition
  16. 2zj9 - X-Ray Crystal Structure of Ampc Beta-Lactamase (Ampc(D)) From An Escherichia Coli With A Tripeptide Deletion (GLY286 SER287 ASP288) on the H10 Helix
  17. 2zk9 - Crystal Structure of Protein-Glutaminase
  18. 2zka - Urate Oxidase Complexed With 8-Azaxanthine Under 1.0 Mpa Oxygen Pressure
  19. 2zkb - Urate Oxidase Complexed With 8-Azaxanthine Under 2.5 Mpa Oxygen Pressure
  20. 2zn8 - Crystal Structure Of ZN2+-Bound Form of Alg-2
  21. 2znb - Metallo-Beta-Lactamase (Cadmium-Bound Form)
  22. 2znd - Crystal Structure Of CA2+-Free Form of DES3-20ALG-2
  23. 2zne - Crystal Structure Of ZN2+-Bound Form of DES3-23ALG-2 Complexed With Alix Abs Peptide
  24. 2znk - Thrombin Inhibition
  25. 2zo3 - Bisphenylic Thrombin Inhibitors
  26. 2zo5 - Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex With Azide
  27. 2zoq - Structural Dissection of Human Mitogen-Activated Kinase ERK1
  28. 2zq3 - The Crystal Structure Of the Orthorhombic Form of Hen Egg White Lysozyme At 1.6 Angstroms Resolution
  29. 2zs7 - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Citrate Anion
  30. 2zs9 - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Adp and Pantothenate
  31. 2zsa - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Adp and Phosphopantothenate
  32. 2zsd - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Coenzyme A
  33. 2zse - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Amppcp and Pantothenate
  34. 2zsf - Pantothenate Kinase From Mycobacterium Tuberculosis (Mtpank) in Complex With Atp and Adp
  35. 2zsg - Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8
  36. 2zxk - Crystal Structure of Semet-Red Chlorophyll Catabolite Reductase
  37. 2zxl - Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana
  38. 2zxs - Effect of Glycine-Amide (Glyad) on Lysozyme
  39. 2zxw - Bovine Heart Cytochrome C Oxidase At the Fully Oxidized State (1-S X- Ray Exposure Dataset)
  40. 2zyl - Crystal Structure of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis
  41. 2zyp - X-Ray Structure of Hen Egg-White Lysozyme With Poly(Allyl Amine)
  42. 352d - The Crystal Structure of A Parallel-Stranded Parallel- Stranded Guanine Tetraplex At 0.95 Angstrom Resolution
  43. 378d - Structure Of the Side-By-Side Binding of Distamycin to Dna
  44. 3a03 - Crystal Structure of HOX11L1 Homeodomain
  45. 3a07 - Crystal Structure of Actinohivin; Potent Anti-Hiv Protein
  46. 3a0i - Human Glucokinase in Complex With A Synthetic Activator
  47. 3a34 - Effect of Ariginine on Lysozyme
  48. 3a65 - Crystal Structure of 6-Aminohexanoate-Dimer Hydrolase S112A/G181D/H266N Mutant With Substrate
  49. 3a66 - Crystal Structure of 6-Aminohexanoate-Dimer Hydrolase S112A/G181D/H266N/D370Y Mutant With Substrate
  50. 3a6s - Crystal Structure of the Mutt Protein


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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