Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
      2xmm
      2xn4
      2xn9
      2xna
      2xnj
      2xvx
      2xvz
      2xw7
      2xxr
      2xxt
      2xxu
      2xxz
      2xyn
      2xz2
      2xzi
      2xzj
      2xzk
      2y00
      2y02
      2y03
      2y04
      2y4j
      2y85
      2y8k
      2yeq
      2yfa
      2ygj
      2yj7
      2yxt
      2yxu
      2yyk
      2z12
      2z18
      2z19
      2z1n
      2z2f
      2z3b
      2z4o
      2z5d
      2z68
      2z8f
      2zak
      2zal
      2zc9
      2zda
      2zdv
      2zf0
      2zff
      2zfp
      2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 39 (1901-1950), PDB files 2xmm - 2zfq






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1901-1950 (2xmm - 2zfq):
  1. 2xmm - Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side
  2. 2xn4 - Crystal Structure Of the Kelch Domain of Human KLHL2 (Mayven)
  3. 2xn9 - Crystal Structure of the Ternary Complex Between Human T Cell Receptor, Staphylococcal Enterotoxin H and Human Major Histocompatibility Complex Class II
  4. 2xna - Crystal Structure of the Complex Between Human T Cell Receptor and Staphylococcal Enterotoxin
  5. 2xnj - Crystal Structure of An Engineered Ferredoxin(Flavodoxin) Nadp(H) Reductase (Fpr) From Escherichia Coli
  6. 2xvx - Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native)
  7. 2xvz - Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Co-Crystallized With Cobalt)
  8. 2xw7 - Structure of Mycobacterium Smegmatis Putative Reductase MS0308
  9. 2xxr - Crystal Structure of the GLUK2 (GLUR6) Wild-Type Lbd Dimer in Complex With Glutamate
  10. 2xxt - Crystal Structure of the GLUK2 (GLUR6) Wild-Type Lbd Dimer in Complex With Kainate
  11. 2xxu - Crystal Structure of the GLUK2 (GLUR6) M770K Lbd Dimer in Complex With Glutamate
  12. 2xxz - Crystal Structure of the Human JMJD3 Jumonji Domain
  13. 2xyn - Human ABL2 in Complex With Aurora Kinase Inhibitor Vx-680
  14. 2xz2 - Crystal Structure of Cstf-50 Homodimerization Domain
  15. 2xzi - The Aspergillus Fumigatus Sialidase Is A Kdnase: Structural and Mechanistic Insights
  16. 2xzj - The Aspergillus Fumigatus Sialidase Is A Kdnase: Structural and Mechanistic Insights
  17. 2xzk - The Aspergillus Fumigatus Sialidase Is A Kdnase: Structural and Mechanistic Insights
  18. 2y00 - Turkey BETA1 Adrenergic Receptor With Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92)
  19. 2y02 - Turkey BETA1 Adrenergic Receptor With Stabilising Mutations and Bound Agonist Carmoterol
  20. 2y03 - Turkey BETA1 Adrenergic Receptor With Stabilising Mutations and Bound Agonist Isoprenaline
  21. 2y04 - Turkey BETA1 Adrenergic Receptor With Stabilising Mutations and Bound Partial Agonist Salbutamol
  22. 2y4j - Mannosylglycerate Synthase in Complex With Lactate
  23. 2y85 - Crystal Structure of Mycobacterium Tuberculosis Phosphoribosyl Isomerase With Bound Rcdrp
  24. 2y8k - Structure of CTGH5-CBM6, An Arabinoxylan-Specific Xylanase.
  25. 2yeq - Structure of Phod
  26. 2yfa - X-Ray Structure of Mcps Ligand Binding Domain in Complex With Malate
  27. 2ygj - Methanobactin MB4
  28. 2yj7 - Crystal Structure of A Hyperstable Protein From the Precambrian Period
  29. 2yxt - Human Pyridoxal Kinase
  30. 2yxu - Human Pyridoxal Kinase
  31. 2yyk - Crystal Structure Of the Mutant of Hpab (T198I, A276G, and R466H)
  32. 2z12 - Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration
  33. 2z18 - Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution
  34. 2z19 - Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution
  35. 2z1n - Crystal Structure of APE0912 From Aeropyrum Pernix K1
  36. 2z2f - X-Ray Crystal Structure of Bovine Stomach Lysozyme
  37. 2z3b - Crystal Structure of Bacillus Subtilis Codw, A Non- Canonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus
  38. 2z4o - Wild Type Hiv-1 Protease With Potent Antiviral Inhibitor Grl-98065
  39. 2z5d - Human Ubiquitin-Conjugating Enzyme E2 H
  40. 2z68 - Crystal Structure of An Artificial Metalloprotein: Cr[N- Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]/Wild Type Heme Oxygenase
  41. 2z8f - The Galacto-N-Biose-/Lacto-N-Biose I-Binding Protein (Gl-Bp) of the Abc Transporter From Bifidobacterium Longum in Complex With Lacto-N- Tetraose
  42. 2zak - Orthorhombic Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) With Active-Site T179A Mutation
  43. 2zal - Crystal Structure of E. Coli Isoaspartyl Aminopeptidase/L-Asparaginase in Complex With L-Aspartate
  44. 2zc9 - Thrombin in Complex With Inhibitor
  45. 2zda - Exploring Thrombin S1 Pocket
  46. 2zdv - Exploring Thrombin S1 Pocket
  47. 2zf0 - Exploring Thrombin S1 Pocket
  48. 2zff - Exploring Thrombin S1-Pocket
  49. 2zfp - Thrombin Inibition
  50. 2zfq - Exploring Thrombin S3 Pocket


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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