Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
      2x20
      2x21
      2x2e
      2x2f
      2x2v
      2x5x
      2x6w
      2x6y
      2x76
      2x7a
      2x7f
      2x7j
      2x7k
      2x7r
      2x8j
      2x98
      2x9n
      2x9x
      2xbv
      2xbw
      2xbx
      2xby
      2xc0
      2xc4
      2xc5
      2xcd
      2xcj
      2xdc
      2xdj
      2xe4
      2xge
      2xgl
      2xhb
      2xio
      2xjh
      2xjl
      2xjp
      2xjq
      2xjr
      2xjs
      2xjt
      2xju
      2xjv
      2xjw
      2xkl
      2xlg
      2xmb
      2xmd
      2xmj
      2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 38 (1851-1900), PDB files 2x20 - 2xmk






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1851-1900 (2x20 - 2xmk):
  1. 2x20 - Structure of Peridinin-Chlorophyll-Protein Reconstituted With Chl-B
  2. 2x21 - Structure of Peridinin-Chlorophyll-Protein Reconstituted With Bchl-A
  3. 2x2e - Dynamin Gtpase Dimer, Long Axis Form
  4. 2x2f - Dynamin 1 Gtpase Dimer, Short Axis Form
  5. 2x2v - Structural Basis of A Novel Proton-Coordination Type in An F1FO-Atp Synthase Rotor Ring
  6. 2x5x - The Crystal Structure Of PHAZ7 At Atomic (1.2 Angstrom) Resolution Reveals Details of the Active Site and Suggests A Substrate Binding Mode
  7. 2x6w - Tailspike Protein Mutant E372Q of E.Coli Bacteriophage HK620 in Complex With Hexasaccharide
  8. 2x6y - Tailspike Protein Mutant D339A of E.Coli Bacteriophage HK620 in Complex With Hexasaccharide
  9. 2x76 - The Crystal Structure Of PHAZ7 At Atomic (1.2 Angstrom) Resolution Reveals Details of the Active Site and Suggests A Substrate Binding Mode
  10. 2x7a - Structural Basis of Hiv-1 Tethering to Membranes By the BST2-Tetherin Ectodomain
  11. 2x7f - Crystal Structure Of the Kinase Domain of Human TRAF2- and Nck-Interacting Kinase With WEE1CHK1 Inhibitor
  12. 2x7j - Structure of the Menaquinone Biosynthesis Protein Mend From Bacillus Subtilis
  13. 2x7k - The Crystal Structure of PPIL1 in Complex With Cyclosporine A Suggests A Binding Mode For Skip
  14. 2x7r - Crystal Structure Of A Late Fusion Intermediate of Hiv-1 GP41
  15. 2x8j - Intracellular Subtilisin Precursor From B. Clausii
  16. 2x98 - H.Salinarum Alkaline Phosphatase
  17. 2x9n - High Resolution Structure of TBPTR1 in Complex With Cyromazine
  18. 2x9x - Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae
  19. 2xbv - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  20. 2xbw - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  21. 2xbx - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  22. 2xby - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  23. 2xc0 - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  24. 2xc4 - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  25. 2xc5 - Factor Xa in Complex With A Pyrrolidine-3,4-Dicarboxylic Acid Inhibitor
  26. 2xcd - Structure of Yncf,the Genomic Dutpase From Bacillus Subtilis
  27. 2xcj - Crystal Structure Of P2 C, the Immunity Repressor of Temperate E. Coli Phage P2
  28. 2xdc - Structure of Linear Gramicidin D Obtained Using Type I Crystals Grown in A Lipid Cubic Phase.
  29. 2xdj - Crystal Structure Of the N-Terminal Domain of E.Coli Ybgf
  30. 2xe4 - Structure of Oligopeptidase B From Leishmania Major
  31. 2xge - Crystal Structure Of A Designed Heterodimeric Variant T-A(A) B of the Tetracycline Repressor
  32. 2xgl - The X-Ray Structure Of The Escherichia Coli Colicin M Immunity Protein Demonstrates the Presence of A Disulphide Bridge, Which Is Functionally Essential
  33. 2xhb - Crystal Structure of Dna Polymerase From Thermococcus Gorgonarius in Complex With Hypoxanthine-Containing Dna
  34. 2xio - Structure of Putative Deoxyribonuclease TATDN1 Isoform A
  35. 2xjh - Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
  36. 2xjl - Monomeric Human Cu,Zn Superoxide Dismutase Without Cu Ligands
  37. 2xjp - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and Mannose
  38. 2xjq - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae
  39. 2xjr - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and MAN5(D2-D3)
  40. 2xjs - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and A1,2-Mannobiose
  41. 2xjt - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and MAN5(D1)
  42. 2xju - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae With Mutation S227A in Complex With Calcium and A1,2-Mannobiose
  43. 2xjv - X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae With Mutation D201T in Complex With Calcium and Glucose
  44. 2xjw - Lysozyme-Co Releasing Molecule Adduct
  45. 2xkl - Crystal Structure of Mouse Apolipoprotein M
  46. 2xlg - Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Open
  47. 2xmb - G117H Mutant of Human Butyrylcholinesterase in Complex With Sulfate
  48. 2xmd - G117H Mutant of Human Butyrylcholinesterase in Complex With Echothiophate
  49. 2xmj - Visualising the Metal-Binding Versatility of Copper Trafficking Sites:ATX1 Side-to-Side (Aerobic)
  50. 2xmk - Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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