Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
      2ieo
      2ieq
      2ihl
      2ihm
      2iit
      2iiz
      2ija
      2il5
      2ily
      2ilz
      2im0
      2im1
      2im2
      2im3
      2iso
      2isp
      2isz
      2itc
      2iw2
      2iwf
      2iwk
      2iy6
      2izc
      2ize
      2izv
      2j40
      2j45
      2j56
      2j5a
      2j5n
      2j5w
      2j6k
      2j6l
      2j80
      2j9e
      2j9n
      2j9y
      2j9z
      2jba
      2jbw
      2jby
      2jc4
      2jca
      2jgp
      2jh0
      2jh5
      2jh6
      2jhj
      2jhn
      2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 29 (1401-1450), PDB files 2ieo - 2jih






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1401-1450 (2ieo - 2jih):
  1. 2ieo - Crystal Structure Analysis of Hiv-1 Protease Mutant I84V With A Potent Non-Peptide Inhibitor (Uic-94017)
  2. 2ieq - Core Structure of S2 From the Human Coronavirus NL63 Spike Glycoprotein
  3. 2ihl - Lysozyme (E.C.3.2.1.17) (Japanese Quail)
  4. 2ihm - Polymerase Mu in Ternary Complex With Gapped 11MER Dna Duplex and Bound Incoming Nucleotide
  5. 2iit - Human Dipeptidyl Peptidase 4 in Complex With A Diazepan-2-One Inhibitor
  6. 2iiz - Crystal Structure of Putative Melanin Biosynthesis Protein Tyra With Bound Heme (NP_716371.1) From Shewanella Oneidensis At 2.30 A Resolution
  7. 2ija - Human N-Acetyltransferase 1 F125S Mutant
  8. 2il5 - Structure Of Protein of Unknown Function SA2116 From Staphylococcus Aureus
  9. 2ily - Crystal Structure of Poliovirus Polymerase Complexed With Atp and MG2+
  10. 2ilz - Crystal Structure of Poliovirus Polymerase Complexed With Gtp and MN2+
  11. 2im0 - Crystal Structure of Poliovirus Polymerase Complexed With Ctp and MG2+
  12. 2im1 - Crystal Structure of Poliovirus Polymerase Complexed With Ctp and MN2+
  13. 2im2 - Crystal Structure of Poliovirus Polymerase Complexed With Utp and MG2+
  14. 2im3 - Crystal Structure of Poliovirus Polymerase Complexed With Utp and MN2+
  15. 2iso - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma- Difluoromethylene Triphosphate
  16. 2isp - Ternary Complex of Dna Polymerase Beta With A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma- Methylene Triphosphate
  17. 2isz - Crystal Structure of A Two-Domain Ider-Dna Complex Crystal Form I
  18. 2itc - Potassium Channel Kcsa-Fab Complex in Sodium Chloride
  19. 2iw2 - Crystal Structure of Human Prolidase
  20. 2iwf - Resting Form of Pink Nitrous Oxide Reductase From Achromobacter Cycloclastes
  21. 2iwk - Inhibitor-Bound Form of Nitrous Oxide Reductase From Achromobacter Cycloclastes At 1.7 Angstrom Resolution
  22. 2iy6 - 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With Bound Citrate
  23. 2izc - Apostreptavidin pH 2.0 I222 Complex
  24. 2ize - Apostreptavidin pH 3.08 I222 Complex
  25. 2izv - Crystal Structure of Socs-4 in Complex With Elongin-B and Elongin-C At 2.55A Resolution
  26. 2j40 - 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus Thermophilus With Bound Inhibitor L-Proline and Nad.
  27. 2j45 - Water Structure of T. Aquaticus Ffh Ng Domain At 1.1A Resolution
  28. 2j56 - X-Ray Reduced Paraccocus Denitrificans Methylamine Dehydrogenase N-Semiquinone in Complex With Amicyanin.
  29. 2j5a - Folding of S6 Structures With Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons
  30. 2j5n - 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus Thermophirus With Bound Inhibitor Glysine and Nad.
  31. 2j5w - Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites
  32. 2j6k - N-Terminal SH3 Domain of Cms (CD2AP Human Homolog)
  33. 2j6l - Structure of Aminoadipate-Semialdehyde Dehydrogenase
  34. 2j80 - Structure Of Citrate-Bound Periplasmic Domain of Sensor Histidine Kinase Cita
  35. 2j9e - Structure of GLNK1 With Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake
  36. 2j9n - Robotically Harvested Trypsin Complexed With Benzamidine Containing Polypeptide Mediated Crystal Contacts
  37. 2j9y - Tryptophan Synthase Q114N Mutant in Complex With Compound II
  38. 2j9z - Tryptophan Synthase T110 Mutant Complex
  39. 2jba - Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53A and Y102C.
  40. 2jbw - Crystal Structure of the 2,6-Dihydroxy-Pseudo-Oxynicotine Hydrolase.
  41. 2jby - A Viral Protein Unexpectedly Mimics the Structure and Function of Pro-Survival Bcl-2
  42. 2jc4 - 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis
  43. 2jca - Crystal Structure of the Streptomyces Coelicolor Holo- [Acyl-Carrier-Protein] Synthase (Acps) At 2 A.
  44. 2jgp - Structure Of The TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc
  45. 2jh0 - Human Thrombin Hirugen Inhibitor Complex
  46. 2jh5 - Human Thrombin Hirugen Inhibitor Complex
  47. 2jh6 - Human Thrombin Hirugen Inhibitor Complex
  48. 2jhj - 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus
  49. 2jhn - 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus
  50. 2jih - Crystal Structure of Human Adamts-1 Catalytic Domain and Cysteine-Rich Domain (Complex-Form)


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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