Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
      2gg9
      2ggb
      2ggc
      2ggn
      2ghc
      2ghe
      2gie
      2gig
      2gij
      2gin
      2git
      2gjp
      2gjr
      2gju
      2gkm
      2gkn
      2gko
      2gkp
      2gl3
      2gln
      2gmh
      2gn0
      2gn1
      2gn2
      2gno
      2gsi
      2gt9
      2gta
      2gtw
      2gtx
      2gtz
      2gu1
      2gu4
      2gu5
      2gu6
      2gu7
      2gum
      2guo
      2gvh
      2gvk
      2gw0
      2gws
      2gxb
      2gyq
      2h34
      2h4v
      2h5f
      2h6v
      2h9e
      2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 27 (1301-1350), PDB files 2gg9 - 2h9j






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1301-1350 (2gg9 - 2h9j):
  1. 2gg9 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  2. 2ggb - Novel Bacterial Methionine Aminopeptidase Inhibitors
  3. 2ggc - Novel Bacterial Methionine Aminopeptidase Inhibitors
  4. 2ggn - Conformational Mobility in the Active Site of A Heme Peroxidase
  5. 2ghc - Conformational Mobility in the Active Site of A Heme Peroxidase
  6. 2ghe - Conformational Mobility in the Active Site of A Heme Peroxidase
  7. 2gie - Hincii Bound to Cognate Dna Gttaac
  8. 2gig - Alteration Of Sequence Specificity of the Type II Restriction Endonuclease Hincii Through An Indirect Readout Mechanism
  9. 2gij - Q138F Hincii Bound to Cognate Dna Gttaac and CA2+
  10. 2gin - X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana
  11. 2git - Human Class I Mhc Hla-A2 in Complex With the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide
  12. 2gjp - Structure of Bacillus Halmapalus Alpha-Amylase, Crystallized With the Substrate Analogue Acarbose and Maltose
  13. 2gjr - Structure of Bacillus Halmapalus Alpha-Amylase Without Any Substrate Analogues
  14. 2gju - Crystal Structure of Hypothetical Protein PH1004 From Pyrococcus Horikoshii OT3
  15. 2gkm - Crystal Structure of Mycobacterium Tuberculosis Trhbn TYRB10PHE Mutant
  16. 2gkn - Crystal Structure of Mycobacterium Tuberculosis Trhbn, GLNE11VAL Mutant
  17. 2gko - S41 Psychrophilic Protease
  18. 2gkp - Protein of Unknown Function NMB0488 From Neisseria Meningitidis
  19. 2gl3 - Crystal Structure of Mycobacterium Tuberculosis Trhbn, TYRB10PHE GLNE11VAL Mutant
  20. 2gln - Crystal Structure of Mycobacterium Tuberculosis Trhbn, GLNE11ALA Mutant
  21. 2gmh - Structure of Porcine Electron Transfer Flavoprotein- Ubiquinone Oxidoreductase in Complexed With Ubiquinone
  22. 2gn0 - Crystal Structure of Dimeric Biodegradative Threonine Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A Resolution (Triclinic Form With One Complete Subunit Built in Alternate Conformation)
  23. 2gn1 - Crystal Structure Of Dimeric Biodegradative Threonine Deaminase (Tdcb) From Salmonella Typhimurium At 2.2A Resolution (Triclinic Form With One Dimer of Tdcb in the Asymmetric Unit)
  24. 2gn2 - Crystal Structure of Tetrameric Biodegradative Threonine Deaminase (Tdcb) From Salmonella Typhimurium in Complex With Cmp At 2.5A Resolution (Hexagonal Form)
  25. 2gno - Crystal Structure of A Dna Polymerase III, Gamma Subunit-Related Protein (TM0771) From Thermotoga Maritima MSB8 At 2.00 A Resolution
  26. 2gsi - Crystal Structure of A Murine Fab in Complex With An 11 Residue Peptide Derived From Staphylococcal Nuclease
  27. 2gt9 - Human Class I Mhc Hla-A2 in Complex With the Decameric Melan-A/Mart- 1(26-35) Peptide
  28. 2gta - Crystal Structure of the Putative Pyrophosphatase Ypjd From Bacillus Subtilis. Northeast Structural Genomics Consortium Target SR428.
  29. 2gtw - Human Class I Mhc Hla-A2 in Complex With the Nonameric Melan-A/Mart- 1(27-35) Peptide Having A27L Substitution
  30. 2gtx - Structural Basis of Catalysis By Mononuclear Methionine Aminopeptidase
  31. 2gtz - Human Class I Mhc Hla-A2 in Complex With the Nonameric Melan-A/Mart- 1(27-35) Peptide Having A28L Substitution
  32. 2gu1 - Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae
  33. 2gu4 - E. Coli Methionine Aminopeptidase in Complex With Nlep, 1: 0.5, Di-Metalated
  34. 2gu5 - E. Coli Methionine Aminopeptidase in Complex With Nlep, 1: 1, Di-Metalated
  35. 2gu6 - E. Coli Methionine Aminopeptidase in Complex With Nlep, 1: 2, Di-Metalated
  36. 2gu7 - E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
  37. 2gum - Crystal Structure Of the Extracellular Domain of Glycoprotein B From Herpes Simplex Virus Type I
  38. 2guo - Human Class I Mhc Hla-A2 in Complex With the Native Nonameric Melan- A/Mart-1(27-35) Peptide
  39. 2gvh - Crystal Structure of Acyl-Coa Hydrolase (15159470) From Agrobacterium Tumefaciens At 2.65 A Resolution
  40. 2gvk - Crystal Structure of A Dye-Decolorizing Peroxidase (Dyp) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.6 A Resolution
  41. 2gw0 - A D(Tggggt)- Sodium and Calcium Complex.
  42. 2gws - Crystal Structure of Human Dna Polymerase Lambda With A G/G Mismatch in the Primer Terminus
  43. 2gxb - Crystal Structure of the Za Domain Bound to Z-Rna
  44. 2gyq - Ycfi, A Putative Structural Protein From Rhodopseudomonas Palustris.
  45. 2h34 - Apoenzyme Crystal Structure of the Tuberculosis Serine/Threonine Kinase, Pkne
  46. 2h4v - Crystal Structure of the Human Tyrosine Receptor Phosphatase Gamma
  47. 2h5f - Denmotoxin: A the Three-Finger Toxin From Colubrid Snake Boiga Dendrophila With Bird-Specific Activity
  48. 2h6v - Spectroscopic And Structural Study of the Heterotropic Linkage Between Halide and Proton Ion Binding to Gfp Proteins- E2(Gfp) Apo Form
  49. 2h9e - Crystal Structure of Fxa/Selectide/NAPC2 Ternary Complex
  50. 2h9j - Structure of Hen Egg White Lysozyme Soaked With NI2- Xylylbicyclam


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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