Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
      2fld
      2flh
      2fm1
      2fmp
      2fmq
      2fms
      2fpr
      2fqe
      2fqg
      2frs
      2fs6
      2fsu
      2ftl
      2ftm
      2ftp
      2ftx
      2fv7
      2fw0
      2fwe
      2fwf
      2fxg
      2fxh
      2fxj
      2fza
      2g1u
      2g2c
      2g4i
      2g4t
      2g50
      2g64
      2g78
      2g79
      2g7b
      2g82
      2g84
      2ga4
      2gc4
      2gc7
      2gde
      2gdi
      2gep
      2gez
      2gfg
      2gfh
      2gg0
      2gg2
      2gg3
      2gg5
      2gg7
      2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 26 (1251-1300), PDB files 2fld - 2gg8






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 1251-1300 (2fld - 2gg8):
  1. 2fld - I-Msoi Re-Designed For Altered Dna Cleavage Specificity
  2. 2flh - Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex With Cytokinin
  3. 2fm1 - Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima At 2.25 A Resolution
  4. 2fmp - Dna Polymerase Beta With A Terminated Gapped Dna Substrate and Ddctp With Sodium in the Catalytic Site
  5. 2fmq - Sodium in Active Site of Dna Polymerase Beta
  6. 2fms - Dna Polymerase Beta With A Gapped Dna Substrate and Dumpnpp With Magnesium in the Catalytic Site
  7. 2fpr - Crystal Structure the N-Terminal Domain of E. Coli Hisb. Apo Mg Model.
  8. 2fqe - Crystal Structures of E. Coli Laccase Cueo Under Different Copper Binding Situations
  9. 2fqg - Crystal Structures of E. Coli Laccase Cueo Under Different Copper Binding Situations
  10. 2frs - Crystal Structure Of the F15W Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II At 1.51 Angstroms Resolution
  11. 2fs6 - Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II At 1.35 Angstroms Resolution
  12. 2fsu - Crystal Structure of the Phnh Protein From Escherichia Coli
  13. 2ftl - Crystal Structure of Trypsin Complexed With Bpti At 100K
  14. 2ftm - Crystal Structure of Trypsin Complexed With the Bpti Variant (TYR35- >Gly)
  15. 2ftp - Crystal Structure of Hydroxymethylglutaryl-Coa Lyase From Pseudomonas Aeruginosa
  16. 2ftx - Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain
  17. 2fv7 - Crystal Structure of Human Ribokinase
  18. 2fw0 - Apo Open Form of Glucose/Galactose Binding Protein
  19. 2fwe - Crystal Structure Of The C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)
  20. 2fwf - High Resolution Crystal Structure Of The C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Reduced Form)
  21. 2fxg - Crystal Structure of Katg At pH 4.5
  22. 2fxh - Crystal Structure of Katg At pH 6.5
  23. 2fxj - Crystal Structure of Katg At pH 8.5
  24. 2fza - Crystal Structure of D(Gcgggagc): the Base-Intercalated Duplex
  25. 2g1u - Crystal Structure of A Putative Transport Protein (TM1088A) From Thermotoga Maritima At 1.50 A Resolution
  26. 2g2c - Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae.
  27. 2g4i - Anomalous Substructure of Concanavalin A
  28. 2g4t - Anomalous Substructure of Porcine Pancreatic Elastase (Na)
  29. 2g50 - The Location Of the Allosteric Amino Acid Binding Site of Muscle Pyruvate Kinase.
  30. 2g64 - Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase
  31. 2g78 - Crystal Structure Of the R132K:Y134F Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex With All- Trans-Retinoic Acid At 1.70 Angstroms Resolution
  32. 2g79 - Crystal Structure Of the R132K:Y134F Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex With All- Trans-Retinal At 1.69 Angstroms Resolution
  33. 2g7b - Crystal Structure Of the R132K:R111L:L121E Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex With All-Trans-Retinal At 1.18 Angstroms Resolution
  34. 2g82 - High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis
  35. 2g84 - Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea.
  36. 2ga4 - STX2 With Adenine
  37. 2gc4 - Structural Comparison Of The Oxidized Ternary Electron Transfer Complex of Methylamine Dehydrogenase, Amicyanin and Cytochrome C551I From Paracoccus Denitrificans With the Substrate-Reduced, Copper Free Complex At 1.9 A Resolution.
  38. 2gc7 - Substrate Reduced, Copper Free Complex of Methylamine Dehydrogenase, Amicyanin and Cytochrome C551I From Paracoccus Denitrificans.
  39. 2gde - Thrombin in Complex With Inhibitor
  40. 2gdi - Crystal Structure of Thiamine Pyrophosphate-Specific Riboswitch in Complex With Thiamine Pyrophosphate
  41. 2gep - Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii [4FE-4S] +2, Sulfite Complex
  42. 2gez - Crystal Structure of Potassium-Independent Plant Asparaginase
  43. 2gfg - Crystal Structure of A Putative Adenylate Cyclase (BH2851) From Bacillus Halodurans At 2.12 A Resolution
  44. 2gfh - Crystal Structure of A N-Acetylneuraminic Acid Phosphatase (Nanp) From Mus Musculus At 1.90 A Resolution
  45. 2gg0 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  46. 2gg2 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  47. 2gg3 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  48. 2gg5 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  49. 2gg7 - Novel Bacterial Methionine Aminopeptidase Inhibitors
  50. 2gg8 - Novel Bacterial Methionine Aminopeptidase Inhibitors


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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