Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
      1d11
      1d12
      1d39
      1d3a
      1d3d
      1d3p
      1d3q
      1d3t
      1d3y
      1d4p
      1d6w
      1d7r
      1d7s
      1d7u
      1d7v
      1d9i
      1dbi
      1dcr
      1dcw
      1de7
      1det
      1dgd
      1di3
      1di4
      1di5
      1diz
      1dk1
      1dka
      1doj
      1dp0
      1dph
      1dps
      1dpy
      1dty
      1dui
      1duq
      1dx5
      1e39
      1e3x
      1e3z
      1e40
      1e43
      1e6a
      1e7p
      1eas
      1eat
      1eau
      1ebf
      1ebu
      1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 3 (101-150), PDB files 1d11 - 1ej2






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 101-150 (1d11 - 1ej2):
  1. 1d11 - Interactions Between An Anthracycline Antibiotic and Dna Molecular Stucture of Daunomycin Complexed to D(Cpgptpapcpg) At 1.2-Angstroms Resolution
  2. 1d12 - Structural Comparison of Anticancer Drug-Dna Complexes. Adriamycin and Daunomycin
  3. 1d39 - Covalent Modification Of Guanine Bases In Double Stranded Dna: The 1.2 Angstroms Z-Dna Structure Of D(Cgcgcg) in the Presence of CUCL2
  4. 1d3a - Crystal Structure of The Wild Type Halophilic Malate Dehydrogenase in the Apo Form
  5. 1d3d - Crystal Structure of Human Alpha Thrombin in Complex With Benzothiophene Inhibitor 4
  6. 1d3p - Crystal Structure of Human Aplha-Thrombin in Complex With Benzo[B]Thiophene Inhibitor 3
  7. 1d3q - Crystal Structure of Human Alpha Thrombin in Complex With Benzo[B]Thiophene Inhibitor 2
  8. 1d3t - Crystal Structure of Human Alpha Thrombin in Complex With Benzo[B]Thiophene Inhibitor 1
  9. 1d3y - Structure of the Dna Topoisomerase VI A Subunit
  10. 1d4p - Crystal Structure of Human Alpha Thrombin in Complex With 5- Amidinoindole-4-Benzylpiperidine Inhibitor
  11. 1d6w - Structure of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1
  12. 1d7r - Crystal Structure Of the Complex of 2,2-Dialkylglycine Decarboxylase With 5PA
  13. 1d7s - Crystal Structure Of the Complex of 2,2-Dialkylglycine Decarboxylase With Dcs
  14. 1d7u - Crystal Structure Of the Complex of 2,2-Dialkylglycine Decarboxylase With Lcs
  15. 1d7v - Crystal Structure Of the Complex of 2,2-Dialkylglycine Decarboxylase With Nma
  16. 1d9i - Structure of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1
  17. 1dbi - Crystal Structure of A Thermostable Serine Protease
  18. 1dcr - Crystal Structure of Dna Sheared Tandem G-A Base Pairs
  19. 1dcw - Structure of A Four-Way Junction in An Inverted Repeat Sequence.
  20. 1de7 - Interaction Of Factor XIII Activation Peptide With Alpha-Thrombin: Crystal Structure of the Enzyme-Substrate Complex
  21. 1det - Ribonuclease T1 Carboxymethylated At Glu 58 in Complex With 2'Gmp
  22. 1dgd - An Alkali Metal Ion Size-Dependent Switch in the Active Site Structure of Dialkylglycine Decarboxylase
  23. 1di3 - Role Of Amino Acid Residues At Turns in the Conformational Stability and Folding of Human Lysozyme
  24. 1di4 - Role Of Amino Acid Residues At Turns in the Conformational Stability and Folding of Human Lysozyme
  25. 1di5 - Role Of Amino Acid Residues At Turns in the Conformational Stability and Folding of Human Lysozyme
  26. 1diz - Crystal Structure of E. Coli 3-Methyladenine Dna Glycosylase (Alka) Complexed With Dna
  27. 1dk1 - Detailed View Of A Key Element Of The Ribosome Assembly: Crystal Structure of the S15-Rrna Complex
  28. 1dka - Dialkylglycine Decarboxylase Structure: Bifunctional Active Site and Alkali Metal Binding Sites
  29. 1doj - Crystal Structure of Human Alpha-Thrombin*Rwj-51438 Complex At 1.7 A
  30. 1dp0 - E. Coli Beta-Galactosidase At 1.7 Angstrom
  31. 1dph - Conformational Changes In Cubic Insulin Crystals in the pH Range 7-11
  32. 1dps - The Crystal Structure of Dps, A Ferritin Homolog That Binds and Protects Dna
  33. 1dpy - Three-Dimensional Structure of A Novel Phospholipase A2 From Indian Common Krait At 2.45 A Resolution
  34. 1dty - Crystal Structure of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor.
  35. 1dui - Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant
  36. 1duq - Crystal Structure Of the Rev Binding Element of Hiv-1
  37. 1dx5 - Crystal Structure of the Thrombin-Thrombomodulin Complex
  38. 1e39 - Flavocytochrome C3 From Shewanella Frigidimarina Histidine 365 Mutated to Alanine
  39. 1e3x - Native Structure of Chimaeric Amylase From B. Amyloliquefaciens and B. Licheniformis At 1.92A
  40. 1e3z - Acarbose Complex of Chimaeric Amylase From B. Amyloliquefaciens and B. Licheniformis At 1.93A
  41. 1e40 - Tris/Maltotriose Complex of Chimaeric Amylase From B. Amyloliquefaciens and B. Licheniformis At 2.2A
  42. 1e43 - Native Structure of Chimaeric Amylase From B. Amyloliquefaciens and B. Licheniformis At 1.7A
  43. 1e6a - Fluoride-Inhibited Substrate Complex of Saccharomyces Cerevisiae Inorganic Pyrophosphatase
  44. 1e7p - Quinol:Fumarate Reductase From Wolinella Succinogenes
  45. 1eas - Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3. Design, Synthesis, X-Ray Crystallographic Analysis, and Structure-Activity Relationships For A Series of Orally Active 3-Amino-6-Phenylpyridin-2-One Trifluoromethyl Ketones
  46. 1eat - Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography Of A Series of Orally Active 5-Amino-Pyrimidin-6-One-Containing Trifluoromethylketones
  47. 1eau - Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6. Design of A Potent, Intratracheally Active, Pyridone-Based Trifluoromethyl Ketone
  48. 1ebf - Homoserine Dehydrogenase From S. Cerevisiae Complex With Nad+
  49. 1ebu - Homoserine Dehydrogenase Complex With Nad Analogue and L- Homoserine
  50. 1ej2 - Crystal Structure of Methanobacterium Thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase With Bound Nad+


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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